Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16a11
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0251 + 16436846-16438237 29 1.8
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 28 3.1
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729... 28 3.1
01_06_1427 + 37296883-37297588,37298504-37298658,37300596-37300955 28 3.1
03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279... 27 4.1
04_01_0481 - 6302066-6303118 27 5.4
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 27 5.4
01_06_1475 + 37634831-37636297 27 7.1
01_03_0253 + 14273324-14273707 27 7.1
07_03_0179 + 14801037-14801108,14801325-14802788 26 9.4
>12_02_0251 + 16436846-16438237
Length = 463
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -2
Query: 130 GADSRAK---LSVSCTSLVPADKPRLHRASCSTP 38
GA +R+ LSVSCT +V +HR+ CS P
Sbjct: 358 GASARSAPRLLSVSCTRVVDLTTTGVHRSPCSPP 391
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2
Query: 127 ADSRAKLSVSCTSLVPADKPRLHRASCSTPY 35
A S +KLS C +VP P L R SC +PY
Sbjct: 273 AVSFSKLSSFCNLMVPIGPPSLSR-SCMSPY 302
>03_02_0308 -
7297228-7298008,7298495-7298576,7298612-7298669,
7298723-7298835,7298924-7299034,7299480-7299597,
7299706-7299809,7300570-7300665,7301806-7302307
Length = 654
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 42 VEQLARCNLGLSAGTKLVHETDSLARESAPDGRSKTTSSRTESFSA 179
VEQ CN + G+ LV + ++++E G K S++ + +A
Sbjct: 608 VEQKPECNGSSNGGSSLVDKKSAVSKEQQNGGMKKVGSNKVQPNAA 653
>01_06_1427 + 37296883-37297588,37298504-37298658,37300596-37300955
Length = 406
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 73 CQPAPNWYMRRTAWRESPPLMGVPRQLAAGLRASVQLTNRPIFIFKIPSVRSQD 234
C P+P R T+ SPPL P AAG A+ T P + + PSV + +
Sbjct: 4 CSPSPRRRGRPTSPSGSPPLDRTPSAKAAGGGATT--TVSPYALARSPSVSAAE 55
>03_06_0483 -
34226496-34226864,34227140-34227360,34227677-34227933,
34228388-34228483,34228660-34228805,34229774-34229977
Length = 430
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 112 KLSVSCTSLVPADKPRLHRASCS 44
+L ++C+SL P+D+PR +A S
Sbjct: 214 RLGLACSSLAPSDRPRFGQAVVS 236
>04_01_0481 - 6302066-6303118
Length = 350
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 36 YGVEQLARCNLGLSAGTKLVHETDSLARE 122
YG+++ + NL +SAG H+T RE
Sbjct: 171 YGLDKESTANLDISAGGSFAHKTTKEGRE 199
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 42 VEQLARCNLGLSAGTKLVHETDSLARESAPDGRSKTTSSRTESF 173
+EQ+ R +LG+++ T L ++ +AP G + +SF
Sbjct: 533 LEQVRRTDLGVNSPTALTSRVSNIPEVNAPQGTNPLRHHSLQSF 576
>01_06_1475 + 37634831-37636297
Length = 488
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 81 GTKLVHETDSLARESAPDGRSKTTSSRT 164
G+KLV E+ + A P G S+ TSS+T
Sbjct: 426 GSKLVFESLAQAAAPPPSGSSQQTSSKT 453
>01_03_0253 + 14273324-14273707
Length = 127
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 151 VVLERPSGADSRAKLSVSCTSLVPADKP 68
V+L RP+ D R S +CT L + KP
Sbjct: 75 VLLSRPADDDGRVHASFACTLLDKSGKP 102
>07_03_0179 + 14801037-14801108,14801325-14802788
Length = 511
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 36 YGVEQLARCNLGLSAGTKLVHETDSLARE 122
YG+++ + NL +SAG H+T + RE
Sbjct: 60 YGLDKESAKNLDISAGGSFAHKTTTEGRE 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,059,701
Number of Sequences: 37544
Number of extensions: 168012
Number of successful extensions: 476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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