Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16a11
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   0.95 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   8.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   8.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   8.8  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 381 LLHYFNENQSLNIALYIINLNDLIKKT 301
           +++ F+ N  +N  + I N+NDLIK T
Sbjct: 386 VIYGFDFND-VNFRILIANVNDLIKNT 411


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 387 FLLLHYFNENQSLNIALYIINLNDLIKKTENKTHKQFC 274
           F L  +   + +++ ALY + LN  ++K   +    FC
Sbjct: 301 FFLAGFETSSTTMSNALYELALNQDVQKKLREEINTFC 338


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 97   MRRTAWRESPP 129
            + RTAWR+  P
Sbjct: 1345 LERTAWRQQQP 1355


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -2

Query: 85  VPADKPRLHRASCSTPYSH*ILNV 14
           VPA++ + +   C  PY     N+
Sbjct: 206 VPAERHKKYYPCCDEPYPDIFFNI 229


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 85  VPADKPRLHRASCSTPYSH*ILNV 14
           VPA +   +   C+ PYS    N+
Sbjct: 220 VPASRNEEYYPCCTEPYSDITFNI 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,509
Number of Sequences: 438
Number of extensions: 1797
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)