Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16a10
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-3|AAF39786.2|  301|Caenorhabditis elegans Hypothetical ...    30   0.48 
U80031-3|AAB37613.1|  524|Caenorhabditis elegans Hypothetical pr...    30   0.63 
AF025452-4|AAB70945.1|  642|Caenorhabditis elegans Hypothetical ...    30   0.63 
Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z68319-6|CAA92704.2|  618|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA ...    29   1.5  
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    28   1.9  
U61948-5|AAB03149.2|  509|Caenorhabditis elegans Hypothetical pr...    28   2.5  
U80031-5|AAB37615.1|  547|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U40410-4|AAA81393.1|  259|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose 6-pho...    27   5.9  
U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose 6-pho...    27   5.9  
AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative treh...    27   5.9  
AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans trehalose-6-p...    27   5.9  
AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    26   7.8  

>AC006624-3|AAF39786.2|  301|Caenorhabditis elegans Hypothetical
           protein C53D5.4 protein.
          Length = 301

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 362 QLFIRHSLAHVFSSPHLYLAHEVSHWSQPNCEHKRAVQQSLAKMAFIPRRNDN 204
           ++F   ++ H    P LY  H + H SQ      +  Q++LA +A +P+ +DN
Sbjct: 150 KMFGAGNIPHFQPPPDLYQHHHIPHTSQ------QVAQENLAMLANVPKLDDN 196


>U80031-3|AAB37613.1|  524|Caenorhabditis elegans Hypothetical
           protein B0554.4 protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -1

Query: 286 GVNQTVSINAQCNKASPRWHLF--LGGMTIIIPV 191
           G +QTV+INA+C+     W+    LGG+ +  P+
Sbjct: 482 GFDQTVTINAECSNVDSIWYYISELGGLPVKKPL 515



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 277 QTVSINAQCNKASPRWH 227
           QTV+INA+CN A   W+
Sbjct: 146 QTVTINAECNSADMVWY 162


>AF025452-4|AAB70945.1|  642|Caenorhabditis elegans Hypothetical
           protein B0454.8 protein.
          Length = 642

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 277 QTVSINAQCNKASPRWH 227
           QTV+INAQCN A  +W+
Sbjct: 128 QTVTINAQCNTADMKWN 144



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 277 QTVSINAQCNKASPRWH 227
           QTV+INAQCN A   W+
Sbjct: 248 QTVTINAQCNTADMIWN 264



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 277 QTVSINAQCNKASPRWH 227
           QTV+INAQCN A   W+
Sbjct: 368 QTVTINAQCNTADMIWN 384



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 277 QTVSINAQCNKASPRWH 227
           QTV+INAQCN A   W+
Sbjct: 488 QTVTINAQCNTADMIWN 504


>Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 374 FLRNQLFIRHSLAHVFSSPHLYLAH-EVSHWSQPNCEHKRAVQQSLAKM 231
           F RN+L + H L H +   HLY  + E     Q   E   A+ +++  M
Sbjct: 99  FARNELCVPHPLHHYYDIKHLYYGNQEEDGMEQEEIEDDVAIARAILDM 147


>Z68319-6|CAA92704.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 374 FLRNQLFIRHSLAHVFSSPHLYLAH-EVSHWSQPNCEHKRAVQQSLAKM 231
           F RN+L + H L H +   HLY  + E     Q   E   A+ +++  M
Sbjct: 99  FARNELCVPHPLHHYYDIKHLYYGNQEEDGMEQEEIEDDVAIARAILDM 147


>AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA
           binding protein SYM-2 protein.
          Length = 618

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 374 FLRNQLFIRHSLAHVFSSPHLYLAH-EVSHWSQPNCEHKRAVQQSLAKM 231
           F RN+L + H L H +   HLY  + E     Q   E   A+ +++  M
Sbjct: 99  FARNELCVPHPLHHYYDIKHLYYGNQEEDGMEQEEIEDDVAIARAILDM 147


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 268 SINAQCNKASPRWHLFLGGMTIIIPVCVQ-LRLSIVCCGSGLRSNF 134
           +I  QC K       FLGG T+I P C Q  R S+      + +NF
Sbjct: 138 TICLQCIKKLLNTRTFLGGNTVICPSCRQNTRYSLTTPADKIPTNF 183


>U61948-5|AAB03149.2|  509|Caenorhabditis elegans Hypothetical
           protein C46A5.2 protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 85  NGFILGDSFQICYGISQNY 141
           NG+   D FQ CYG SQ Y
Sbjct: 233 NGYTCTDLFQTCYGGSQTY 251


>U80031-5|AAB37615.1|  547|Caenorhabditis elegans Hypothetical
           protein B0554.2 protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 277 QTVSINAQCNKASPRWHLF--LGGMTI 203
           QTV+INA+C+     W+    +GG TI
Sbjct: 150 QTVTINAECSSVDMVWYYVTTIGGQTI 176



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 277 QTVSINAQCNKASPRWH--LFLGGMTIIIPV 191
           QTV+INA+C+     W+    + G T+ +P+
Sbjct: 265 QTVAINAECSSVDSIWNYVTVVAGQTVKVPM 295


>U40410-4|AAA81393.1|  259|Caenorhabditis elegans Hypothetical
           protein C54G7.1 protein.
          Length = 259

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/14 (78%), Positives = 11/14 (78%), Gaps = 2/14 (14%)
 Frame = -3

Query: 218 RRNDNYHSCL--CP 183
           RRND YHSCL  CP
Sbjct: 72  RRNDEYHSCLQRCP 85


>U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose
           6-phosphate synthaseprotein 1, isoform b protein.
          Length = 1294

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 364 INYLFVIHLPMYSRRHTFIWL 302
           +NYLF I+    SR   FIW+
Sbjct: 461 VNYLFAINAARNSRAQDFIWI 481


>U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose
           6-phosphate synthaseprotein 1, isoform a protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 364 INYLFVIHLPMYSRRHTFIWL 302
           +NYLF I+    SR   FIW+
Sbjct: 498 VNYLFAINAARNSRAQDFIWI 518


>AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative
           trehalose 6-phosphatesynthase protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 364 INYLFVIHLPMYSRRHTFIWL 302
           +NYLF I+    SR   FIW+
Sbjct: 498 VNYLFAINAARNSRAQDFIWI 518


>AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans
           trehalose-6-phosphate synthase protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 364 INYLFVIHLPMYSRRHTFIWL 302
           +NYLF I+    SR   FIW+
Sbjct: 498 VNYLFAINAARNSRAQDFIWI 518


>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 58  SPCTYLNWFNGFILGDSFQICYGISQNYYEDRYH 159
           SP  Y N++ G+         YG + NYY   Y+
Sbjct: 292 SPSYYSNYYGGYNNYGYNNYGYGYNNNYYSGNYY 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,404,088
Number of Sequences: 27780
Number of extensions: 165961
Number of successful extensions: 422
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)