Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16a10
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   0.90 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   0.90 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   2.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   3.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 0.90
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 76  NWFNGFILGDSFQICYGI 129
           ++FN  +L  S+ +CYGI
Sbjct: 205 DYFNRGLLSASYLVCYGI 222


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 0.90
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 76  NWFNGFILGDSFQICYGI 129
           ++FN  +L  S+ +CYGI
Sbjct: 81  DYFNRGLLSASYLVCYGI 98


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/48 (18%), Positives = 20/48 (41%)
 Frame = -3

Query: 311 YLAHEVSHWSQPNCEHKRAVQQSLAKMAFIPRRNDNYHSCLCPIAFKH 168
           +L  + + WSQ   +  + VQQ +       +++   H     + + H
Sbjct: 759 WLGQQGNSWSQQQVQQAQQVQQQMQAAMAAVQQSQQRHQHAAQMIYGH 806


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 236 WRGFVALRVYAHSLVDSN 289
           W+  +  +VY  S +DSN
Sbjct: 25  WKNAIFYQVYPRSFMDSN 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,962
Number of Sequences: 438
Number of extensions: 2133
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)