Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16a09
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0036 - 299140-299190,300001-300078,300202-300205,300657-30... 31 0.91
12_02_0775 - 23049842-23051299 30 2.1
11_01_0038 - 284152-284202,285014-285091,285215-285218,285669-28... 29 2.8
07_01_0722 + 5522862-5523410 29 2.8
12_02_0919 - 24307648-24307770,24308271-24308326,24308429-24308906 29 4.9
07_01_0720 + 5512638-5513141,5513588-5514607 29 4.9
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062... 29 4.9
04_04_0172 + 23290421-23290519,23291564-23291677,23291783-232918... 28 6.4
03_06_0363 - 33385641-33386201,33386421-33386894,33387013-33387429 28 6.4
>12_01_0036 -
299140-299190,300001-300078,300202-300205,300657-300757,
301636-302145,302552-303034,303672-304163
Length = 572
Score = 31.1 bits (67), Expect = 0.91
Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 4/132 (3%)
Frame = -2
Query: 609 IGVVNVEVTIGTYDGLSDTPIRLGDQSINELDNKAIIGAF*PYICARPSIQSLLKFSTKM 430
+GV+N V G G+ R SI+ L + +G +C SLL F +
Sbjct: 335 LGVLNGAVNAGVAAGIIHPLARGSTGSISPLSEQFYLGGNRSLMCRLGGPSSLLGFKKRG 394
Query: 429 TS*SCLKVRAKGSKPTNLEHTSTAI*D----SGCIAVNSSYIFSGPVILSMEFELSYQDK 262
L + S P N E+ ++ + G IAV + S + L EL
Sbjct: 395 -----LGTDLRSSTPENSENVASTSPELSARGGDIAVTAFADLSFDIPLKPLRELGIHGH 449
Query: 261 SIVSTPNLAKLS 226
+ VS NLAKL+
Sbjct: 450 AFVSAGNLAKLT 461
>12_02_0775 - 23049842-23051299
Length = 485
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 86 LFPHTGKSHQMVFDPLLRRLAEKGHHVTVVS 178
+FP H + + L R+A +GHHV+ VS
Sbjct: 13 IFPWLAFGHLLPYMELAERMASRGHHVSFVS 43
>11_01_0038 -
284152-284202,285014-285091,285215-285218,285669-285769,
286642-287151,287550-288032,288668-289156
Length = 571
Score = 29.5 bits (63), Expect = 2.8
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 4/132 (3%)
Frame = -2
Query: 609 IGVVNVEVTIGTYDGLSDTPIRLGDQSINELDNKAIIGAF*PYICARPSIQSLLKFSTKM 430
+GV+N + G G+ R SI+ L + +G +C SLL F +
Sbjct: 334 LGVLNGALNAGVAAGIIHPLARGSTGSISPLSEQFYLGGNRSLMCRLGGPSSLLGFKKRG 393
Query: 429 TS*SCLKVRAKGSKPTNLEHTSTAI*D----SGCIAVNSSYIFSGPVILSMEFELSYQDK 262
L + S P N E+ ++ + G IAV + S + L EL
Sbjct: 394 -----LGTDLQSSTPENSENVASTSPELSARGGDIAVTAFADLSFDIPLKPLRELGIHGH 448
Query: 261 SIVSTPNLAKLS 226
+ VS NLAKL+
Sbjct: 449 AFVSAGNLAKLT 460
>07_01_0722 + 5522862-5523410
Length = 182
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 86 LFPHTGKSHQMVFDPLLRRLAEKGHHVTVVS 178
+FP H + F L +RLA +GH VT VS
Sbjct: 32 VFPWLAFGHMIPFLELSKRLASRGHAVTFVS 62
>12_02_0919 - 24307648-24307770,24308271-24308326,24308429-24308906
Length = 218
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 131 LLRRLAEKGHHVTVVSFFPV--KNPPANYTNISLESLAKLG-VETIDLSWYESSNSILKM 301
L+ +A G H+ +V+FFP+ P + + S SLA L + ++ + +SN +L
Sbjct: 101 LMADIACAGPHLLLVNFFPIYKLGPHQHLRHFSCWSLALLSFISSLSIEGVGTSNLLLAN 160
Query: 302 TGPEKIYEELTAMQP 346
K E+ + P
Sbjct: 161 CRHPKTAEDFLKLSP 175
>07_01_0720 + 5512638-5513141,5513588-5514607
Length = 507
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 35 ACIVLIAHAVASAKILGLFPHTGKSHQMVFDPLLRRLAEKGHHVTVVS 178
A A + +S + +FP H + F L +RLA +GH VT V+
Sbjct: 11 AAAAAAASSSSSPLHIVVFPWLAFGHMIPFLELSKRLASRGHAVTFVT 58
>04_04_0294 +
24204563-24204748,24205531-24205620,24205980-24206211,
24207180-24207457,24207576-24207647,24208054-24208295,
24208781-24209197,24209296-24209497,24209624-24209738,
24209821-24209906,24210235-24210354,24210431-24210519,
24210588-24210669,24211072-24211263,24211546-24211668
Length = 841
Score = 28.7 bits (61), Expect = 4.9
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +2
Query: 425 DVILVENFNSDCMLGLAHIYGQKAPIIALLSSSLMDWSPSRIGVSDNPSYVPIVTSTF-- 598
D+ L +N+ C+L L H S +D S S + P Y +V+S
Sbjct: 108 DICLEKNYQEKCVLALVHSLQSYEDRSPHRKSKALDCSSSLM-----PRYQLMVSSVLLT 162
Query: 599 TTPMSFVQRLKNTVLNIYYK 658
T P+SF + +LN+Y+K
Sbjct: 163 TLPLSFPE-----ILNVYFK 177
>04_04_0172 +
23290421-23290519,23291564-23291677,23291783-23291878,
23291955-23292039,23292262-23292317,23292432-23292510,
23292599-23292733,23292842-23293077,23293173-23293505
Length = 410
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/110 (19%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Frame = +2
Query: 263 LSWYESSNSILKMTGPEKIYEELTAMQPLSYMAVDVCSKLVGFEPLARTLRQDYDVILVE 442
+ W E ++ ++ GP + TA+ + +V +C+ + + + ++ +VE
Sbjct: 30 MGWPERRDNWRELAGPARKVFARTAIAISKFESVTICASAKQYPYVHELMLHQPNIRVVE 89
Query: 443 NFNSDCM---LGLAHIYGQKAPIIALLSSSL--MDWSPSRIGVSDNPSYV 577
+DC +G I + AP + + ++ +DW + G + + YV
Sbjct: 90 MSMNDCWFRDIGPTFIVRKGAPGLGITEKNIAGIDWEFNAWGGATDGCYV 139
>03_06_0363 - 33385641-33386201,33386421-33386894,33387013-33387429
Length = 483
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 86 LFPHTGKSHQMVFDPLLRRLAEKGHHVTVVS 178
+FP H + + L +RLA +GH VT VS
Sbjct: 13 VFPWLAFGHMIPYLELSKRLAARGHDVTFVS 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,114,399
Number of Sequences: 37544
Number of extensions: 441443
Number of successful extensions: 1103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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