Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16a07
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar...    35   0.006
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   1.2  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    27   1.6  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    26   2.8  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    25   4.9  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   4.9  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   6.5  

>SPAC1296.02 |cox4||cytochrome c oxidase subunit
           IV|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 34.7 bits (76), Expect = 0.006
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
 Frame = +3

Query: 111 LDLLTGIEKRELLAHLAG-DCDPFRILSIKKGPGTRERPNLIPSSNSSRLICCHCTESDN 287
           L+  TG+E+ ELL+ L+G D    + L   +  GT   P ++ S +  R I C  + S +
Sbjct: 69  LEQATGLERYELLSELSGRDAFDMKPLDASR-KGTLTDPIMVTSLDPYRHIGCTGSPSGS 127

Query: 288 H-LKFMWLHQGDPKRC-GCGYWFEL 356
           H L +M +++   +RC  CG  ++L
Sbjct: 128 HNLIWMTVYKDKLRRCPECGSVYKL 152


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +2

Query: 155  FSGRLRSIPYSFHQERTRNTRASELDTQLKLISSHL--LSLYRVGQPSEIYVATPRRSKT 328
            F+G  +++ +SF   RTRNTR  +   + K +SS L   ++Y    PS  YV   +  + 
Sbjct: 887  FTGVCQAVKFSFQCLRTRNTRKLD-HGEFKKLSSFLSQRNMY-YANPSLCYVYGKKHMQA 944

Query: 329  MRLWILV*IMSNCTAL 376
              + I++ ++   T +
Sbjct: 945  RIIGIMLLLLMAMTVV 960


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 120 KGPKGQLVFYRIGLQASRRRATILITYLD 34
           +GP+G ++FYR G ++  +R   ++  L+
Sbjct: 252 RGPRGAMIFYRKGTRSHDKRGNPILYELE 280


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +2

Query: 143 ITRAFSGRLRSIPYSFHQE-RT---RNTRASELDTQLKLISSHLLSLYRVGQ 286
           I RA  GRLR  PY  HQ  RT   R  +A + D  + L+ S   +L+ + Q
Sbjct: 5   IKRA-EGRLREDPYEGHQMLRTLVNRQVKAKKHDDAVALLYSGAKTLFEIEQ 55


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 172 SQSPAKCASNSRFSMPVKRSKGSISFL*NRTPSLE 68
           S SP + +S+S FS+P +    ++SF  N  P  +
Sbjct: 178 SDSPLEPSSSSSFSVPPESLNPTLSFQHNDVPQTD 212


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 391 NRTTPQSGAIGHNSNQYPQPHRFGSPWCSHINFRWLSDS 275
           +R   Q G I +N N   +P + G P  SH  F+ L+D+
Sbjct: 129 HRFLEQWGLINYNVNPDTRPSKIGPPSTSH--FQILADT 165


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 234 PSSNSSRLICCHCTE 278
           P  + SR ICC+CT+
Sbjct: 413 PLLSRSRFICCYCTK 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,992
Number of Sequences: 5004
Number of extensions: 36206
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)