Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16a07
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0311 - 2243117-2243185,2243321-2243400,2243554-2243620,224...    43   9e-05
01_05_0682 + 24251861-24251911,24252036-24252086,24255244-242553...    41   5e-04
04_04_0498 - 25654988-25655168,25658149-25658257,25658376-256584...    29   2.1  
07_01_0234 + 1715338-1718233,1718351-1718760                           28   3.6  
03_02_0983 - 12933082-12934884,12935669-12936487,12936754-129367...    28   3.6  
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262...    28   3.6  
08_02_1449 - 27174451-27178005                                         27   4.8  
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535...    27   6.3  

>06_01_0311 -
           2243117-2243185,2243321-2243400,2243554-2243620,
           2245176-2245226,2245317-2245402,2245501-2245612
          Length = 154

 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
 Frame = +3

Query: 105 DPLDLLTGIEKRELLAHLAGDCDPFRILSIKKGP-GTRERPNLIPSSNSSRLICCHCTE- 278
           D + + TG+E+ E+ A L G    F  +    GP GT+E P +I S  + R++ C   E 
Sbjct: 48  DVMPIATGLEREEIAAELQGK-KRFD-MDAPVGPFGTKEAPAVIQSYYNKRIVGCPGGEG 105

Query: 279 SDNH-LKFMWLHQGDPKRCG-CGYWFEL 356
            D H + + WL +G P  C  C  +F L
Sbjct: 106 EDEHDVVWFWLEKGKPHECPVCTQYFSL 133


>01_05_0682 +
           24251861-24251911,24252036-24252086,24255244-24255310,
           24255405-24255484,24255631-24255696
          Length = 104

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
 Frame = +3

Query: 111 LDLLTGIEKRELLAHLAGDCDPFRILSIKKGP-GTRERPNLIPSSNSSRLICCHCTE-SD 284
           + + TG+E+ EL A L G+   F  +    GP GT+E P +I S  + R++ C   E  D
Sbjct: 1   MPIATGLEREELAAELKGE-KRFD-MDPPVGPFGTKEAPAVIESYYNKRIVGCPGGEGED 58

Query: 285 NH-LKFMWLHQGDPKRCG-CGYWFEL 356
            H + + WL + +P  C  C  +F L
Sbjct: 59  EHDVVWFWLKKDEPHECPVCSQYFVL 84


>04_04_0498 -
           25654988-25655168,25658149-25658257,25658376-25658478,
           25658634-25658883,25659011-25659126,25659332-25659587,
           25659713-25659800,25659951-25660025,25660143-25660218,
           25660308-25660366,25660972-25661038,25668502-25668810
          Length = 562

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 63  GVSRLGVRFYRKLIDPLDLLTGIEKRELLAH 155
           GV+  G+ FY KLID + LL GI+    L H
Sbjct: 176 GVNPAGIDFYNKLIDSI-LLKGIQPFVTLTH 205


>07_01_0234 + 1715338-1718233,1718351-1718760
          Length = 1101

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 304 GYTKEIQNDAAVDTGLNYVQLHRFEVLFYCDLK 402
           G+ K +     V   ++Y+    +EV+ +CDLK
Sbjct: 889 GFLKRLDTMLDVSMAMDYLHNQHYEVVLHCDLK 921


>03_02_0983 -
           12933082-12934884,12935669-12936487,12936754-12936795,
           12937116-12937244
          Length = 930

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 102 IDPLDLLTGIEKRELLAHLAGDCDPFRILSIKKGPGTRERPNLIPSSNS 248
           I+    L+ + KR  L   + D    R  S  KGPG  +    +PS++S
Sbjct: 655 IEKRKYLSPVTKRRRLTSCSNDQTSRRSFSFSKGPGLEKEKVKLPSTSS 703


>02_01_0365 +
           2621302-2621711,2622442-2622620,2623381-2623496,
           2623626-2623964,2624113-2624307,2624505-2624594,
           2625288-2625518,2625632-2625952
          Length = 626

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 190 ERIRNGSQSPAKCASNSRFSMPVKRSKGS 104
           +R    S + AKC  N   S P+KR +GS
Sbjct: 48  KRTTRSSANLAKCIENKHHSSPLKRRRGS 76


>08_02_1449 - 27174451-27178005
          Length = 1184

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 126 GIEKRELLAHLAGDCDPFRILSIKKGPGTRERPNLIPSSNSSRLIC--CH 269
           G+E+ + L HL G  + F + +I+ G   RE  NL    N + L+   CH
Sbjct: 685 GLEELKDLHHLGGRLELFNLKAIQSGSNARE-ANLHIQENVTELLLHWCH 733


>11_08_0007 +
           27551173-27551828,27552071-27552282,27553371-27553550,
           27555154-27556187
          Length = 693

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 213 RERPNLIPSSNSSRLICCHCTESDNHLKFMWLHQGDPK 326
           RE P + P  + SR   C+ TE     K  +LH+GD K
Sbjct: 298 REGPAMYPCYSGSR---CYDTEGGYKCKCRFLHRGDGK 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,342,598
Number of Sequences: 37544
Number of extensions: 236052
Number of successful extensions: 637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)