Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16a07
(427 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81070-9|CAB03002.1| 132|Caenorhabditis elegans Hypothetical pr... 84 3e-17
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 30 0.80
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 30 0.80
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 30 0.80
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 30 0.80
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 30 0.80
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 30 0.80
Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical pr... 28 3.2
AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane... 28 3.2
Z72508-8|CAA96640.2| 366|Caenorhabditis elegans Hypothetical pr... 27 7.4
AF101305-8|AAF98599.1| 534|Caenorhabditis elegans Hypothetical ... 27 7.4
U00048-13|AAB53830.1| 484|Caenorhabditis elegans Maternal effec... 26 9.8
U00048-12|AAL27228.1| 507|Caenorhabditis elegans Maternal effec... 26 9.8
AF016670-1|AAB66108.2| 512|Caenorhabditis elegans Hypothetical ... 26 9.8
>Z81070-9|CAB03002.1| 132|Caenorhabditis elegans Hypothetical
protein F26E4.9 protein.
Length = 132
Score = 84.2 bits (199), Expect = 3e-17
Identities = 37/83 (44%), Positives = 52/83 (62%)
Frame = +3
Query: 105 DPLDLLTGIEKRELLAHLAGDCDPFRILSIKKGPGTRERPNLIPSSNSSRLICCHCTESD 284
DPL+ TG EK+ LLA LAGD + + T+++PNL+PS R+I C C +
Sbjct: 41 DPLEHATGREKKMLLARLAGDDRYEPKVYYRAEASTKQKPNLVPSHYDFRIIGCMCEQDS 100
Query: 285 NHLKFMWLHQGDPKRCGCGYWFE 353
H+ FM + +GDPKRC CG+WF+
Sbjct: 101 GHVNFMTIRKGDPKRCECGHWFK 123
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.9 bits (64), Expect = 0.80
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 15 KTKSLKNQDMLLKSLH-GVSRLGVRFYRKLIDPLDLLTGIEKRELLAHLAGDCDPFRILS 191
+ K KN + + H ++G + Y I+ L G + + +L++ AGDCD L+
Sbjct: 4902 QVKWYKNDQEIKPNSHLEAKKIGPKKYELAINRAQLDDGADYKVVLSNAAGDCDSSAALT 4961
Query: 192 IKK 200
+ K
Sbjct: 4962 VVK 4964
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 29.9 bits (64), Expect = 0.80
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 15 KTKSLKNQDMLLKSLH-GVSRLGVRFYRKLIDPLDLLTGIEKRELLAHLAGDCDPFRILS 191
+ K KN + + H ++G + Y I+ L G + + +L++ AGDCD L+
Sbjct: 4262 QVKWYKNDQEIKPNSHLEAKKIGPKKYELAINRAQLDDGADYKVVLSNAAGDCDSSAALT 4321
Query: 192 IKK 200
+ K
Sbjct: 4322 VVK 4324
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.9 bits (64), Expect = 0.80
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 15 KTKSLKNQDMLLKSLH-GVSRLGVRFYRKLIDPLDLLTGIEKRELLAHLAGDCDPFRILS 191
+ K KN + + H ++G + Y I+ L G + + +L++ AGDCD L+
Sbjct: 4902 QVKWYKNDQEIKPNSHLEAKKIGPKKYELAINRAQLDDGADYKVVLSNAAGDCDSSAALT 4961
Query: 192 IKK 200
+ K
Sbjct: 4962 VVK 4964
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.9 bits (64), Expect = 0.80
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 15 KTKSLKNQDMLLKSLH-GVSRLGVRFYRKLIDPLDLLTGIEKRELLAHLAGDCDPFRILS 191
+ K KN + + H ++G + Y I+ L G + + +L++ AGDCD L+
Sbjct: 4902 QVKWYKNDQEIKPNSHLEAKKIGPKKYELAINRAQLDDGADYKVVLSNAAGDCDSSAALT 4961
Query: 192 IKK 200
+ K
Sbjct: 4962 VVK 4964
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 29.9 bits (64), Expect = 0.80
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 15 KTKSLKNQDMLLKSLH-GVSRLGVRFYRKLIDPLDLLTGIEKRELLAHLAGDCDPFRILS 191
+ K KN + + H ++G + Y I+ L G + + +L++ AGDCD L+
Sbjct: 4262 QVKWYKNDQEIKPNSHLEAKKIGPKKYELAINRAQLDDGADYKVVLSNAAGDCDSSAALT 4321
Query: 192 IKK 200
+ K
Sbjct: 4322 VVK 4324
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.9 bits (64), Expect = 0.80
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 15 KTKSLKNQDMLLKSLH-GVSRLGVRFYRKLIDPLDLLTGIEKRELLAHLAGDCDPFRILS 191
+ K KN + + H ++G + Y I+ L G + + +L++ AGDCD L+
Sbjct: 4902 QVKWYKNDQEIKPNSHLEAKKIGPKKYELAINRAQLDDGADYKVVLSNAAGDCDSSAALT 4961
Query: 192 IKK 200
+ K
Sbjct: 4962 VVK 4964
>Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical
protein F56F3.2b protein.
Length = 685
Score = 27.9 bits (59), Expect = 3.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 300 MWLHQGDPKRCGCGYW 347
MW+H RCG G+W
Sbjct: 380 MWIHTDTVNRCGSGWW 395
>Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical
protein F56F3.2a protein.
Length = 687
Score = 27.9 bits (59), Expect = 3.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 300 MWLHQGDPKRCGCGYW 347
MW+H RCG G+W
Sbjct: 380 MWIHTDTVNRCGSGWW 395
>AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane
protein NDG-4 protein.
Length = 687
Score = 27.9 bits (59), Expect = 3.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 300 MWLHQGDPKRCGCGYW 347
MW+H RCG G+W
Sbjct: 380 MWIHTDTVNRCGSGWW 395
>Z72508-8|CAA96640.2| 366|Caenorhabditis elegans Hypothetical
protein F28H7.9 protein.
Length = 366
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 260 LLSLYRVGQPSEIYVATPRRSK-TMRLWILV*IMSNCTALRCCSIVT*NKNYLTK 421
L ++Y P + + TP ++ T+RLW L+ ++SN L + NY K
Sbjct: 271 LCTIYAAVTPIIVIIYTPEWTRETIRLWHLIFLLSNTDQLDLRTTFGEEMNYSDK 325
>AF101305-8|AAF98599.1| 534|Caenorhabditis elegans Hypothetical
protein C04F5.9 protein.
Length = 534
Score = 26.6 bits (56), Expect = 7.4
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = +3
Query: 24 SLKNQDMLLKSLHGVSRLGVRFYRKLIDPLDLLTGIEKRELLAHLAGDCDPFRI 185
SL D + HG +R G F KL + E R LLAHL C P R+
Sbjct: 273 SLGRLDQHTHAFHGTARPG--FVCKLCR----MKFAENRILLAHLRSGCKPMRV 320
>U00048-13|AAB53830.1| 484|Caenorhabditis elegans Maternal effect
lethal protein32, isoform a protein.
Length = 484
Score = 26.2 bits (55), Expect = 9.8
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -2
Query: 120 KGPKGQLVFYRIGLQASRRR 61
+GP+G L+FYR G++++ +
Sbjct: 263 RGPRGALIFYRKGVRSTNAK 282
>U00048-12|AAL27228.1| 507|Caenorhabditis elegans Maternal effect
lethal protein32, isoform b protein.
Length = 507
Score = 26.2 bits (55), Expect = 9.8
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -2
Query: 120 KGPKGQLVFYRIGLQASRRR 61
+GP+G L+FYR G++++ +
Sbjct: 286 RGPRGALIFYRKGVRSTNAK 305
>AF016670-1|AAB66108.2| 512|Caenorhabditis elegans Hypothetical
protein K02F6.7 protein.
Length = 512
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 200 RTRNTRASELDTQLKLISSHLLSLY--RVGQPSEIYVATPR 316
RTRN RA L ++ + H+ LY R+ + ++VA PR
Sbjct: 421 RTRNRRADLLAARVVKYTEHIAHLYVARLDKTIYMHVADPR 461
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,854,199
Number of Sequences: 27780
Number of extensions: 205290
Number of successful extensions: 562
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -