Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16a07
         (427 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    29   0.029
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   2.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   4.4  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 0.029
 Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 184 IRNGSQ--SPAKCASNSRFSMPVKRSKGSISFL*NRTPSLETPCN 56
           + NGS   SP    SNSR S  VKR K  IS     T +L T CN
Sbjct: 314 VHNGSNNGSPRSPESNSRCS--VKREKIKISVSYPSTETLNTKCN 356


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 316 EIQNDAAVD-TGLNYVQLHRFEV 381
           E+ ND  +  TGLN V  +RF+V
Sbjct: 370 EVFNDTKITITGLNAVTTYRFQV 392


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 123 TGIEKRELLAHLAGDCDPFRILSIKKGPGT 212
           T ++ RE+  H A + +   + S+K  PG+
Sbjct: 149 TKVDTREVQPHDASEKEQLGLASVKAEPGS 178


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 18  TKSLKNQDMLLKSLHGVSR 74
           TK  KNQ  LL+ +HG+++
Sbjct: 238 TKYGKNQIKLLEIIHGLTK 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,249
Number of Sequences: 438
Number of extensions: 2649
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)