Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16a06
         (689 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   317   1e-86
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   317   1e-86
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   301   6e-82
AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   268   4e-72
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   244   9e-65
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   170   1e-42

>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  317 bits (778), Expect = 1e-86
 Identities = 155/219 (70%), Positives = 178/219 (81%)
 Frame = +1

Query: 31  GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 210
           GK K   +  KK  +++  VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ L
Sbjct: 4   GKNKGLSKGGKKGGKKKV-VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYL 62

Query: 211 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 390
           KGRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQT
Sbjct: 63  KGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQT 122

Query: 391 LIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNS 570
           LIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ +
Sbjct: 123 LIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGA 182

Query: 571 ELREVVNKLIPDSIAKDIEXACHGIYPLRDVCIRKVKVL 687
           +L+++VNKL  DSIAKDIE +C  IYPL DV IRKVKVL
Sbjct: 183 DLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVL 221


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  317 bits (778), Expect = 1e-86
 Identities = 155/219 (70%), Positives = 178/219 (81%)
 Frame = +1

Query: 31  GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 210
           GK K   +  KK  +++  VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ L
Sbjct: 4   GKNKGLSKGGKKGGKKKV-VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYL 62

Query: 211 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 390
           KGRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQT
Sbjct: 63  KGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQT 122

Query: 391 LIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNS 570
           LIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ +
Sbjct: 123 LIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGA 182

Query: 571 ELREVVNKLIPDSIAKDIEXACHGIYPLRDVCIRKVKVL 687
           +L+++VNKL  DSIAKDIE +C  IYPL DV IRKVKVL
Sbjct: 183 DLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVL 221


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  301 bits (739), Expect = 6e-82
 Identities = 151/221 (68%), Positives = 174/221 (78%), Gaps = 2/221 (0%)
 Frame = +1

Query: 31  GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 210
           GK K   +  KK  +++  VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+  
Sbjct: 4   GKNKGLSKGGKKGGKKKV-VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYF 62

Query: 211 KGRVFEVSLA-DLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 387
           KGRVFEVSL  DLQ D D E SFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQ
Sbjct: 63  KGRVFEVSLVPDLQKDIDPEHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQ 122

Query: 388 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRK-KMCEIITRDVT 564
           TLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYA  +QVR IR  +M +IIT +V+
Sbjct: 123 TLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAHESQVRKIRSGRMTDIITNEVS 182

Query: 565 NSELREVVNKLIPDSIAKDIEXACHGIYPLRDVCIRKVKVL 687
            ++L+++VNKL  DSIAKDIE +C  IYPL DV IRKVKVL
Sbjct: 183 GADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVL 223


>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  268 bits (658), Expect = 4e-72
 Identities = 129/186 (69%), Positives = 152/186 (81%)
 Frame = +1

Query: 31  GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 210
           GK K   +  KK  +++  VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ L
Sbjct: 4   GKNKGLSKGGKKGGKKKV-VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYL 62

Query: 211 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 390
           KGRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQT
Sbjct: 63  KGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQT 122

Query: 391 LIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNS 570
           LIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ +
Sbjct: 123 LIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGA 182

Query: 571 ELREVV 588
           +L++++
Sbjct: 183 DLKQLL 188


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  244 bits (597), Expect = 9e-65
 Identities = 118/158 (74%), Positives = 132/158 (83%)
 Frame = +1

Query: 214 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 393
           GRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73

Query: 394 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 573
           IEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++
Sbjct: 74  IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGAD 133

Query: 574 LREVVNKLIPDSIAKDIEXACHGIYPLRDVCIRKVKVL 687
           L+++VNKL  DSIAKDIE +C  IYPL DV IRKVKVL
Sbjct: 134 LKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVL 171


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  170 bits (414), Expect = 1e-42
 Identities = 81/116 (69%), Positives = 95/116 (81%)
 Frame = +1

Query: 340 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 519
           MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60

Query: 520 AIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEXACHGIYPLRDVCIRKVKVL 687
            IR +M +IIT +V+ ++L+++VNKL  DSIAKDIE +C  IYPL DV IRKVKVL
Sbjct: 61  KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVL 116


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,068,048
Number of Sequences: 53049
Number of extensions: 694936
Number of successful extensions: 2042
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2040
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)