Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15p19
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0456 - 23089507-23090607,23091561-23091635                       32   0.39 
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90...    31   1.2  
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    31   1.2  
09_02_0399 - 8569478-8569795,8570219-8570287,8570760-8570848,857...    28   8.4  
03_05_0149 - 21278418-21278747,21279170-21279238,21279709-212797...    28   8.4  

>02_04_0456 - 23089507-23090607,23091561-23091635
          Length = 391

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 20/92 (21%), Positives = 43/92 (46%)
 Frame = +1

Query: 430 LTFGVNIGTFINSRKPLKKFSALFDEYGPVVRFISPVGNDIVLINHPDHIQKVYTIEGDC 609
           LT+G+  G F+    P  + S        +++      +D+++++  D I   +TI    
Sbjct: 175 LTYGMIGGRFVKGENPFVEESYQRVALDQLIKIAGITDDDLLIMSDVDEIPSGHTIN--- 231

Query: 610 PVRSTLDSLEKYRIEHRNHIYGGLYTLNGEEW 705
            +R   D+ E   ++ RN++Y   + L+ + W
Sbjct: 232 LLRWCDDTPEVLHLQLRNYLYSFQFLLDDKSW 263


>12_01_0119 +
           905916-907277,907737-907774,908269-908492,909411-909637,
           909733-909980,910275-910557,910707-911135
          Length = 936

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
 Frame = +1

Query: 430 LTFGVNIGT--FINSRKPLKKFSALFDEYGPVVRFISPVGNDIVLINHPDHIQKVYTIEG 603
           L F    GT  FI++  P   F    + YGPV  + S    +I+ ++HPD ++ +     
Sbjct: 515 LKFSQKQGTNNFISTLFP--HFLLCRETYGPVFLY-STGALEILQVSHPDMVKDIG---- 567

Query: 604 DCPVRSTLDSLEK--YRIEHRNHIYGG-LYTLNGEEW 705
               R T   L K  Y  + R  ++GG L+T NG+EW
Sbjct: 568 ----RWTPSELGKPNYLKKSRKALFGGGLFTENGDEW 600


>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
            852330-852409,852506-852848,853068-853166,853240-853360,
            853567-853723,853976-854099,855275-855368,855866-857259,
            857882-857924,858240-858458,859379-859605,859701-859948,
            860246-860552,860725-861153
          Length = 1486

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +1

Query: 502  DEYGPVVRFISPVGNDIVLINHPDHIQKVYTIEGDCPVRSTLDSLEK--YRIEHRNHIYG 675
            + YGPV  + S    +I+ ++HPD ++ +         R T   L K  Y  + R  ++G
Sbjct: 1081 ETYGPVFLY-STGAMEILQVSHPDMVKDIG--------RWTPSELGKPNYLKKSRKALFG 1131

Query: 676  G-LYTLNGEEW 705
            G L+T NG+EW
Sbjct: 1132 GGLFTENGDEW 1142


>09_02_0399 -
           8569478-8569795,8570219-8570287,8570760-8570848,
           8571446-8571542,8571920-8571991
          Length = 214

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/66 (21%), Positives = 30/66 (45%)
 Frame = +1

Query: 358 KSLKYLSTVRQYLSDIGTQLTAGILTFGVNIGTFINSRKPLKKFSALFDEYGPVVRFISP 537
           K  +Y++T R+Y   +   + A I +FG N+   +  +  +    ++ + +    R   P
Sbjct: 47  KRREYINTTREYAYTMRLAMAASIYSFGDNLLELLTGKPSVSILESITNGFHLCCRSFEP 106

Query: 538 VGNDIV 555
           V +  V
Sbjct: 107 VASSDV 112


>03_05_0149 -
           21278418-21278747,21279170-21279238,21279709-21279797,
           21280395-21280467,21280846-21280917
          Length = 210

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/66 (21%), Positives = 30/66 (45%)
 Frame = +1

Query: 358 KSLKYLSTVRQYLSDIGTQLTAGILTFGVNIGTFINSRKPLKKFSALFDEYGPVVRFISP 537
           K  +Y++T R+Y   +   + A I +FG N+   +  +  +    ++ + +    R   P
Sbjct: 39  KRREYINTTREYAYTMRLAMAASIYSFGDNLLELLTGKPSVSILESITNGFHLCCRSFEP 98

Query: 538 VGNDIV 555
           V +  V
Sbjct: 99  VASSDV 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,014,259
Number of Sequences: 37544
Number of extensions: 333525
Number of successful extensions: 710
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)