Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15p14
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 40 3e-04
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 40 3e-04
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.69
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 0.69
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 28 0.92
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 28 0.92
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 27 2.1
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 2.1
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 26 2.8
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 26 3.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.7
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 25 4.9
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 4.9
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 6.5
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy... 25 6.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 6.5
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 25 6.5
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.5
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 8.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 8.5
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 8.5
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 39.5 bits (88), Expect = 3e-04
Identities = 28/82 (34%), Positives = 44/82 (53%)
Frame = +2
Query: 203 TRPNSSNEICSLNVSDDHXSSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASV 382
T P SS+ I SL S SS+S A+ S+ATL +AS ++ H L + ++ V
Sbjct: 72 TSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLV 131
Query: 383 ASSVTLNGESETNCKQNDSLXS 448
ASS + +G S ++ + S+ S
Sbjct: 132 ASS-SSSGMSSSSLSHSSSVPS 152
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 39.5 bits (88), Expect = 3e-04
Identities = 33/123 (26%), Positives = 63/123 (51%)
Frame = +2
Query: 80 SVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHX 259
S ND+ S +S+ S S+ D E+ + + + +SS+ S + S+D+
Sbjct: 123 SEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSE-SESSSEDND 181
Query: 260 SSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQNDS 439
SS+S + ++ S++ D D ++SSS+ + + S +SS + + ESE++ + NDS
Sbjct: 182 SSSSSSDSESESSSE-DSDSSSSSSDSE----SESSSEGSDSSSSSSSSESESSSEDNDS 236
Query: 440 LXS 448
S
Sbjct: 237 SSS 239
Score = 34.3 bits (75), Expect = 0.011
Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Frame = +2
Query: 80 SVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHX 259
S ++++ +S++ +S+S+ D + +++ +S + S N SD
Sbjct: 222 SSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSED 281
Query: 260 SSASLATTKQRSTATLDKDVAASSSNIDLYHYLR-APENASVASSVTLNGESETNCKQND 436
S+S ++ + +++ D D +SSS+ D N +S ++ +S TN ++
Sbjct: 282 DSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSE 341
Query: 437 SLXS 448
S
Sbjct: 342 ESTS 345
Score = 33.9 bits (74), Expect = 0.014
Identities = 27/120 (22%), Positives = 62/120 (51%)
Frame = +2
Query: 80 SVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHX 259
S ND+ S +S+ S S+ D E+ + + + +SS+ S + S+D+
Sbjct: 177 SEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSE-SESSSEDND 235
Query: 260 SSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQNDS 439
SS+S + ++ S++ D D ++SSS+ + + +++S +S + S+++ +++S
Sbjct: 236 SSSSSSDSESESSSE-DSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESES 294
Score = 32.7 bits (71), Expect = 0.032
Identities = 29/117 (24%), Positives = 60/117 (51%)
Frame = +2
Query: 89 NDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHXSSA 268
+D+ S +S+ S S+ D E+ + + + +SS+ S + S+ SS+
Sbjct: 162 SDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSE-SESSSEGSDSSS 220
Query: 269 SLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQNDS 439
S ++++ S++ D D ++SSS+ + + S +SS + + ESE++ K +DS
Sbjct: 221 SSSSSESESSSE-DNDSSSSSSDSE----SESSSEDSDSSSSSSDSESESSSKDSDS 272
Score = 31.5 bits (68), Expect = 0.074
Identities = 25/79 (31%), Positives = 47/79 (59%)
Frame = +2
Query: 212 NSSNEICSLNVSDDHXSSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASS 391
+SS+E S + S+D+ SS+S + ++ S++ D D ++SSS+ + + S +SS
Sbjct: 114 SSSSE--SESSSEDNDSSSSSSDSESESSSE-DSDSSSSSSDSE----SESSSEGSDSSS 166
Query: 392 VTLNGESETNCKQNDSLXS 448
+ + ESE++ + NDS S
Sbjct: 167 SSSSSESESSSEDNDSSSS 185
Score = 29.9 bits (64), Expect = 0.23
Identities = 26/114 (22%), Positives = 57/114 (50%)
Frame = +2
Query: 107 KSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHXSSASLATTK 286
K+H + AS + S + + ++ +SS++ S + S+D SS+S + ++
Sbjct: 95 KAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSE 154
Query: 287 QRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQNDSLXS 448
S++ D ++SSS+ + + + +SS + + ESE++ + +DS S
Sbjct: 155 SESSSE-GSDSSSSSSSSE----SESSSEDNDSSSSSSDSESESSSEDSDSSSS 203
Score = 29.1 bits (62), Expect = 0.40
Identities = 27/107 (25%), Positives = 57/107 (53%)
Frame = +2
Query: 128 ASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHXSSASLATTKQRSTATL 307
+S+ S S+ D E+ + + + +SS+ S + S+ SS+S ++++ S++
Sbjct: 121 SSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSE-SESSSEGSDSSSSSSSSESESSSE- 178
Query: 308 DKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQNDSLXS 448
D D ++SSS+ + + S +SS + + ESE++ + +DS S
Sbjct: 179 DNDSSSSSSDSE----SESSSEDSDSSSSSSDSESESSSEGSDSSSS 221
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 0.69
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +2
Query: 128 ASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHXSSASLATTKQRSTATL 307
+S++S S S+ + + + P SS+ S + S SS S T+ +S+++
Sbjct: 309 SSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSF 368
Query: 308 DKDVAASSS 334
V++SSS
Sbjct: 369 SSTVSSSSS 377
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 0.69
Identities = 16/59 (27%), Positives = 34/59 (57%)
Frame = +2
Query: 215 SSNEICSLNVSDDHXSSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASS 391
+S+ I S +++ +S+SLA++ ST + +A+SS++ + ++S+ASS
Sbjct: 140 ASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASS 198
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 27.9 bits (59), Expect = 0.92
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Frame = +2
Query: 80 SVQNDTQRPKSHRARGASNNSYKSKSALPDHAGEN--CVQKNKTRPNSSNEICSLNVSDD 253
S N QR S +G+ ++ K S+ D ++ ++ PN + L++
Sbjct: 68 SALNSLQRSASSSEKGSDEDNEKLGSSEDDEFDDDFDTWEQVDLSPNKQEDKKDLHIVTQ 127
Query: 254 HXSSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLN 403
H + +K+ S++ +DK + S I + H+ + SV + +N
Sbjct: 128 HITPQLTKESKKGSSSAMDKSIRLS---IHIMHFTCLLYHGSVRNRWLMN 174
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 27.9 bits (59), Expect = 0.92
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Frame = +2
Query: 62 TRRRRFSVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTR--PNSSNEICS 235
T R S +D S + ++S S + H E K P+SSNE
Sbjct: 21 TEVTRISNSSDHFEDSSSNVDESLDSSNPSSNEKASHTNEEYRSKGNQSYVPSSSNE--- 77
Query: 236 LNVSDDHXSSASLATTKQRSTATLDKDVAASSSNIDLYHYLRA 364
S + S++ +++ S L D N +L HYLRA
Sbjct: 78 --PSPESSSNSDSSSSDDSSVDRLAGDPFELGENFNLKHYLRA 118
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 128 ASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLN 241
++NN A D EN V+K++TRP+ + S N
Sbjct: 520 SANNDVHEPVARQDPFNENEVEKSRTRPSQESYTTSSN 557
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +2
Query: 320 AASSSNIDLYHYLRAPENASVASSVTLNGESETNCKQ--NDSLXSQHRIKVRS 472
A+++S+I+ EN++V + +LNG + +N K+ N +L R+KV++
Sbjct: 176 ASTNSSINNMVSTVNSENSNVNNGSSLNGNTSSNLKRKANVTLGDYKRLKVKN 228
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -2
Query: 241 IQRTNLIGTVRTCLVLLYTIFSXMVGERGLRFVAVIGGAPRSVRLRS 101
+ R ++ R + Y + ++ L+ V V GGAP+S + R+
Sbjct: 236 VPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARA 282
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 26.2 bits (55), Expect = 2.8
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 134 NNSYKSKSALPDHA-GENCVQKNKTRPNSSNEICSLNVSDDHXSSASLATTKQRSTATLD 310
NN ++ LP + V++N+T+P++SN + +S + + + + T
Sbjct: 54 NNELFNRLTLPSQELRDGIVRENQTKPSNSNSQSNGAISIRGIAGPTNVVIENLAPGTSS 113
Query: 311 KDVAASSSN 337
DVAA+ N
Sbjct: 114 DDVAATLLN 122
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 191 QKNKTRPNSSNEICSLNVSDDHXSSASLATTKQRSTAT 304
+KN+ P ++E NVSD AS ++++S T
Sbjct: 305 EKNENEPIEASESAPTNVSDSTEPKASEVDSEEKSGVT 342
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 3.7
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Frame = +2
Query: 83 VQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNV-SDDHX 259
+ + + R S + N S+ + + + + + +SN I SLN+ S
Sbjct: 796 LSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNLESTSSV 855
Query: 260 SSASLATTKQRSTATL-----DKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETN 421
+S + T ST L V +SS + P +SVA +VT G SET+
Sbjct: 856 TSTAYTTDSVTSTTALTSQGPSSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTG-SETS 913
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 266 ASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNG 406
A+L RS + ASS + + ++ PENA + +T G
Sbjct: 339 ANLKPVNMRSVKSQAMVFCASSPDKSVVEFVLPPENAEIGDRLTFEG 385
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 4.9
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = +2
Query: 95 TQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHXSSASL 274
T+RP++HR S S SK+ P+ + +K S E + S + S S
Sbjct: 493 TERPETHRTLSYSRLSELSKTFSPEIREPSLTKKTAVSMQESKEEGRSDESSESEESGSS 552
Query: 275 ATTKQRS 295
+ S
Sbjct: 553 SDESDNS 559
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.0 bits (52), Expect = 6.5
Identities = 20/89 (22%), Positives = 31/89 (34%)
Frame = +2
Query: 224 EICSLNVSDDHXSSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLN 403
E+ SD+H A TATL++ A + Y AP A ++
Sbjct: 265 EVIQFTKSDEHAKLAKPTNLADLQTATLEQKSAMFTMPDQNYTIEEAPPTAEPWEPISAP 324
Query: 404 GESETNCKQNDSLXSQHRIKVRSPKRCAP 490
+ E SL S + + S +P
Sbjct: 325 KKQEFGVSLPPSLASPEKGGISSTTSVSP 353
>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 144 TNRSP-RSPTMXEK-IVYKRTRHVLTVPMRFV 233
T + P R+P + E ++Y +T H++T P FV
Sbjct: 110 TPKKPIRAPDLLETGLIYAKTIHIITNPKTFV 141
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 6.5
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 203 TRPNSSNEICSLNVSDDHXSSASLATTKQRSTATLDKDVAASSSN 337
T P+SS+ S + S SS+S +++ S+++ ++SSS+
Sbjct: 153 TSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 197
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = +2
Query: 308 DKDVAASSSNIDLYHYLRAPENASVASSVTLNGESE 415
DKD+ I + H+L+A + ++ +T ++E
Sbjct: 548 DKDLGTVPMEISILHFLKAHSHPNIVKMITFFEDNE 583
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 93 IHNDRSLTERGAPPITATNRSPRSPTMXEKIVYK 194
+H + + A P+ A N+SP+S TM + YK
Sbjct: 672 VHKSMTYSPSEASPLYA-NKSPKSSTMVPLMKYK 704
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 24.6 bits (51), Expect = 8.5
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +2
Query: 245 SDDHXSSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAPENASVASSVTLNGESETNC 424
SDD S+ +K+ + T D D+A SS+ I+ + E S ++ + +S TN
Sbjct: 197 SDDDESNTEQDHSKESNLNTADNDLALSST-IEGKKTSTSKEALESESLLSDSDQSMTNI 255
Query: 425 KQNDSL 442
N ++
Sbjct: 256 SSNSTV 261
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 8.5
Identities = 19/90 (21%), Positives = 42/90 (46%)
Frame = +2
Query: 146 KSKSALPDHAGENCVQKNKTRPNSSNEICSLNVSDDHXSSASLATTKQRSTATLDKDVAA 325
++ S P +K+K + SS+E S + S + SS+S + + + + + ++
Sbjct: 60 RASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSS 119
Query: 326 SSSNIDLYHYLRAPENASVASSVTLNGESE 415
S S ++ ++ E +S + + ESE
Sbjct: 120 SESEEEVI--VKTEEKKESSSESSSSSESE 147
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 126 APPITATNRSPRSPTMXEKIVYKRTRH 206
AP + SPR+P + K+ Y T+H
Sbjct: 490 APTLIQNLNSPRTPKIVGKMRYNPTKH 516
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,072
Number of Sequences: 5004
Number of extensions: 38235
Number of successful extensions: 165
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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