Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15p14
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747 30 1.2
02_05_1021 + 33565866-33567431,33568317-33568604 29 2.1
03_03_0219 - 15519076-15520050,15520376-15520579,15520755-155207... 29 2.8
12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272 28 3.7
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 28 3.7
12_01_0603 + 4937472-4938351,4938597-4938689,4938820-4939589,493... 28 4.9
10_08_0255 - 16243951-16244098,16244612-16244817,16245588-162465... 28 4.9
08_01_0909 + 8958727-8958917,8959527-8959611,8960628-8960684,896... 27 6.5
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 27 6.5
06_03_0600 - 22640194-22640643,22640754-22640915,22641018-226410... 27 8.6
05_01_0297 - 2314687-2316021 27 8.6
>11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747
Length = 471
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -2
Query: 232 TNLIGTVRTCLVLLYTIFSXMVGERGLRFVAVIGGAPRSVRLRSLCIIL 86
T +G +TC +L+ T+FS +G R L +A GG +V L SL + L
Sbjct: 311 TVAVGVAKTCSILVATLFSDRLGCRPL-LLASTGG--MAVTLTSLALTL 356
>02_05_1021 + 33565866-33567431,33568317-33568604
Length = 617
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -2
Query: 226 LIGTVRTCLVLLYTIFSXMVGERGLRFVAVIG---GAPRSVRLRSLCIILHG 80
++GT T L+L+ TIF G+ F +G APR ++L L IL G
Sbjct: 459 ILGTTDTYLILICTIFKDKDGKEKTGFSGRMGNRIAAPRLLKLSPLDSILAG 510
>03_03_0219 -
15519076-15520050,15520376-15520579,15520755-15520791,
15522025-15522104
Length = 431
Score = 28.7 bits (61), Expect = 2.8
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Frame = +2
Query: 59 NTRRRRFSVQNDTQRPKSHRARGASNNSYK--------------SKSALPDHAGENCVQK 196
N R R++ +QNDT +S + GAS + K + SA PDH+ + QK
Sbjct: 284 NNRVRKYPMQNDTMSVESVASAGASQPAKKRRLSSGTDRSVVDTASSARPDHSVD---QK 340
Query: 197 NKTRPNSSNEICSLNVSDDH 256
+ + + + C V DH
Sbjct: 341 HLSHDDDAQSCCIGEVESDH 360
>12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272
Length = 786
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 251 DHXSSASLATTKQRSTATLDKDV-AASSSNIDLYHYLRAPENASVASSVTLNGESETN 421
D S SLA T S L KDV A S D+ H+ AS +V + ES+++
Sbjct: 563 DDPSEDSLARTAAESLVALCKDVFQAGSPLADILHWFADLAIASKEDAVVCSSESDSD 620
>03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 28.3 bits (60), Expect = 3.7
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = +2
Query: 188 VQKNKTRPNSSNEICSLNVSDDHXSSASLATTKQRSTATLDKDVAASSSNIDLYHYLRAP 367
VQ NK PN + N + D S Q A+ DVA SS+N +
Sbjct: 933 VQPNKITPNILQSMMFPNSAADTNLWGSQKADDQGQRASTPSDVATSSTNSQNQETKQGG 992
Query: 368 E-NASVASSVTLNGESETNCKQNDSL 442
+ +A +ASS +N +S +S+
Sbjct: 993 DSDAGLASSEMVNLDSTGATMSRESI 1018
>12_01_0603 +
4937472-4938351,4938597-4938689,4938820-4939589,
4939706-4939809,4940026-4940548,4940697-4941074
Length = 915
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 374 ASVASSVTLNGESETNCKQNDSLXSQHRIKVRS 472
AS+A S T G+S ++C+ NDS Q K +S
Sbjct: 765 ASLADSNTQGGQSSSSCQGNDSTTPQVASKRKS 797
>10_08_0255 -
16243951-16244098,16244612-16244817,16245588-16246500,
16246577-16246713
Length = 467
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 332 SNIDLYHYLRAPENASVASS 391
S +DL H++RAP N++ +SS
Sbjct: 423 SGVDLIHFVRAPSNSTPSSS 442
>08_01_0909 +
8958727-8958917,8959527-8959611,8960628-8960684,
8961311-8961437,8961602-8961973,8962907-8962915,
8963196-8963327,8963404-8963609,8963697-8963756
Length = 412
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 340 DVTRAGGHVLVQRRGGTLLRGSERR 266
DV R GG V+V+ GG R ERR
Sbjct: 19 DVNRGGGGVMVEIGGGLAARERERR 43
>05_03_0634 + 16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 80 SVQNDTQRPKSHRARGASNNSYKSKSALPDHAGENCVQKNKTRPNSSNEICSLNVS 247
S+ ++T+ +S R G +N S+S P + +KNKT+P S VS
Sbjct: 953 SLVSNTKGKRSER-EGKGHNRDGSRSGRPSSSNAKGERKNKTKPKQKTANISAPVS 1007
>06_03_0600 -
22640194-22640643,22640754-22640915,22641018-22641062,
22641230-22641322,22642815-22642901,22642963-22643049
Length = 307
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = -2
Query: 223 IGTVRTCLVLLYTIFSXMVGERGLRFVAVIGGAPRSVRLRSLCIILHGESASPRVRHFTR 44
+G + TC +LL + F G + + V +GG L + I+H E + R + T
Sbjct: 7 VGVLLTCFLLLSSAFGNGSGLQAGKCVGAMGGTAVCKELVNGYYIIH-EKGNERTGYITN 65
Query: 43 NLYLFFLFIKSV 8
+ + FI ++
Sbjct: 66 TYEVRYGFIATM 77
>05_01_0297 - 2314687-2316021
Length = 444
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 376 GVFRSP*VMIEIDVTRAGGHVLVQRRGGTLLRGSERRRALVVVGHIQRTNLIGTVR 209
GV SP +++++ GG VL R T+ + L+ VG + R TVR
Sbjct: 143 GVLGSPLLLVQVTRLLCGGFVLAVRVNHTMCDAIGAAQFLLAVGELARGLPAPTVR 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,345,082
Number of Sequences: 37544
Number of extensions: 285034
Number of successful extensions: 907
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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