Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15p06
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    29   0.69 
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    27   2.1  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   8.5  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.5  

>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 226 GPQAPLTTVSPGWTIASGRKHSWLN-RWPELFSACWMTFILLGISLLVFYAIGISV 390
           GPQ P T V   + I + +KH + N  WP L  A ++ F ++  S+       +S+
Sbjct: 131 GPQNPRTIVGLNYVIDTLKKHVFNNLLWPSLDKAGFINFQVVEPSMYTSLTTTLSI 186


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 301 RWPELFSACWMTFILLGISLLVFYAI-GISVYRHQGL-IFVNCNDTRPY 441
           RWPE+F+A       LG+++++F  + G + Y + G  +F       PY
Sbjct: 223 RWPEIFNANIRYRTFLGMAVMMFQQLTGANYYFYYGTQVFRGTGMDSPY 271


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 333 HPTGRE*FGPPIKPRMFSPRSNGPSWRYRSKRRLRTHT 220
           HP G + FG P +        +  SW Y + ++++  T
Sbjct: 100 HPMGWDAFGLPAENAAIENGISASSWTYENIKKMKEQT 137


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 351 NISSGILRYWY 383
           N+S G+L+YWY
Sbjct: 143 NVSGGLLKYWY 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,540
Number of Sequences: 5004
Number of extensions: 57340
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)