Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15p06
         (602 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF450111-1|AAP46292.1|  911|Homo sapiens voltage-gated potassium...    31   3.1  
AF338730-1|AAK16585.1|  911|Homo sapiens potassium voltage-gated...    31   3.1  

>AF450111-1|AAP46292.1|  911|Homo sapiens voltage-gated potassium
           channel alpha subunit Kv2.2 protein.
          Length = 911

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 368 NTRRDIPNKINVIQQAENNSGHRLSQECFLPEAMVHPGDT 249
           N R+DI + ++ +++  +  G ++    F PE   +PGDT
Sbjct: 862 NCRQDIYHAVSEVKKDSSQEGCKMENHLFAPEIHSNPGDT 901


>AF338730-1|AAK16585.1|  911|Homo sapiens potassium voltage-gated
           channel, Shab-related subfamily, member 2 protein.
          Length = 911

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 368 NTRRDIPNKINVIQQAENNSGHRLSQECFLPEAMVHPGDT 249
           N R+DI + ++ +++  +  G ++    F PE   +PGDT
Sbjct: 862 NCRQDIYHAVSEVKKDSSQEGCKMENHLFAPEIHSNPGDT 901


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,291,610
Number of Sequences: 237096
Number of extensions: 2297865
Number of successful extensions: 8836
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8836
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)