Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15o22
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 42 8e-05
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|... 33 0.028
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.61
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 29 0.80
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 29 0.80
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo... 29 0.80
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 29 0.80
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 1.8
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 27 1.8
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 2.4
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 27 3.2
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 26 5.6
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 25 9.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.9
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 25 9.9
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 25 9.9
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 41.9 bits (94), Expect = 8e-05
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +2
Query: 329 LEEDAYVEGIAKIIQRDFFPDLEKLNAQ 412
LEED Y+EG++ IIQ+ +FPDL KL A+
Sbjct: 30 LEEDDYIEGLSYIIQQQYFPDLPKLKAE 57
>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 290
Score = 33.5 bits (73), Expect = 0.028
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 660 LARKEXKLW-LSVISAVLSLVAFFVCLGASSLLVAGVHGRSMFGVSKVAGVLYGSVGGLF 484
L++K W V+S+V S+V +CLG + L +FG S VAG +Y G F
Sbjct: 71 LSKKTRLNWDAHVVSSVQSIV--LICLGYTCLKEVNAFPDKLFGYSVVAGDIYALTAGYF 128
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 29.1 bits (62), Expect = 0.61
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 386 PDLEKLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTEPYNT 514
P LEK N +N+ E EN+ + E T++ N P EP NT
Sbjct: 2192 PALEKYNLENQKKEILENESKE---EETRQPEVNIQPEEPINT 2231
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 28.7 bits (61), Expect = 0.80
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 514 GVIWFCRWSVPAILLS*FSKSLIVFVFC 431
G IWFC WS+ + S ++KS+I+F C
Sbjct: 118 GYIWFCIWSLIS-GFSYYAKSVIMFDVC 144
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 28.7 bits (61), Expect = 0.80
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 350 EGIAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLREL 466
E I K+I++ PDLE + +EYL E K ++REL
Sbjct: 355 EHITKLIEQQIKPDLESMLIISEYL--NEYKPSPKMREL 391
>SPCC1795.03 |gms1||UDP-galactose transporter
Gms1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 28.7 bits (61), Expect = 0.80
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 215 RFLQLTFFIMFVACLIMCVYKNYLNKLQKDIFRAFNALI 99
R +QL+FF +F CL + K+Y N + F +N+++
Sbjct: 218 RNVQLSFFSLF-PCLFTILMKDYHNIAENGFFFGYNSIV 255
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 28.7 bits (61), Expect = 0.80
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 437 NKDYQRLRELTQ-KYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTKNATKDK 613
+K YQR R Q KY GN P E T + TP +PAT R T N ++D
Sbjct: 105 HKVYQRGRGAKQSKYLGNGKPIEASQTEESSSTPP-----SPATKKSSKQRLTMN-SRDA 158
Query: 614 TAD 622
D
Sbjct: 159 ALD 161
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = +2
Query: 395 EKLNAQNEYLEATENKDYQRLRELT-----QKYSGNRPPTEPYNTPA-TFDTPNIDRPCT 556
++L + NE L + +++ ++L+EL Q R E ++ A D P PCT
Sbjct: 346 KELASSNELLASVRDENTKKLKELQDIIEEQSKHMARLHREGFSEAAENNDKPKETMPCT 405
Query: 557 PATNNEDAPRQTKNATKDK 613
++ D T N +KDK
Sbjct: 406 YDSSLADDHSDTSNLSKDK 424
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = +2
Query: 416 EYLEATENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTK 595
EY+E K Q+ E K + +P P N P F+T I R N AP +T+
Sbjct: 62 EYIE----KQRQKKLEKMAKKAARKPIAPPSNAPPEFNTDFIKREMLSIPNY--APFETE 115
Query: 596 NATKDKT 616
+ D T
Sbjct: 116 KSALDIT 122
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 329 LEEDAYVEG-IAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLRELTQKYS 481
LEE+A + + K+ + DLE LN N +EA +++ ++E TQ+ S
Sbjct: 411 LEENALLSHKVLKLTEE--IQDLETLNQLNTEIEARQSEKLNEVQEETQRLS 460
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 612 LSLVAFFVCLGASSLLVAGVHGRSMFGVS 526
LS+V FF CL A+ L H FG+S
Sbjct: 28 LSVVLFFNCLAATLYLHGYKHSSVFFGIS 56
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 356 IAKIIQRDFFPDLEKLNAQNEY--LEATENKDYQRLRELTQKYSGNRPPTEPYNTPAT 523
+A+ +D FP +EKL ++E L ++D ++ E+ G+ PP P TPA+
Sbjct: 244 LARETFKDEFPMIEKLLREDEEGNLWFHASEDAKKFAEVY----GHSPPASPSRTPAS 297
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/85 (21%), Positives = 35/85 (41%)
Frame = +2
Query: 413 NEYLEATENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQT 592
+E + + +D L E Q +G + Y P + + +P +N T
Sbjct: 251 SERFPSVDFEDPSLLMENQQNITGTGSFAD-YLQPPSSGSLGAFTNASPGESNTGIDFDT 309
Query: 593 KNATKDKTADITDNHSLXSFLAKHT 667
N + + D+ NHS SF+ +++
Sbjct: 310 DNTNLNPSVDLLSNHSTPSFIFENS 334
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 557 PATNNEDAPRQTKNATKDKTADITDNHSLXS 649
P+ N E+ P++TKN + + HS+ S
Sbjct: 2 PSLNQEETPKKTKNPYRKGHSRRQSRHSIPS 32
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 337 RCLCGGHSKNYSKRFLP*P 393
+C CG HSK Y LP P
Sbjct: 372 KCYCGLHSKTYPCSSLPSP 390
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 181 TNIIKNVSWRKRYEAWRGSI 240
TN+ +V WR + E+ RG++
Sbjct: 427 TNVTGSVDWRSKLESQRGAV 446
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 9.9
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +2
Query: 407 AQNEYLEATENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTP-NIDRPCTPATNNE--D 577
A+NE + A E R L +K NR + TP T + P N + T +
Sbjct: 283 ARNEEMLAMEKAGLGRKNSLIRKLGLNRSASMMSRTPNTLNRPSNYRSHSSMGTRRSPLN 342
Query: 578 APRQTKNATKDKTADITDNHS 640
+P Q + + +D D+++
Sbjct: 343 SPSQLDPISNENESDTDDSNT 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,182
Number of Sequences: 5004
Number of extensions: 50738
Number of successful extensions: 184
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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