Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15o22
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   4.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.1  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 622 ICGFVFSGIFCLSGSILIVG 563
           +C FV   +F +SG +++VG
Sbjct: 177 LCVFVAGVVFIVSGLLMLVG 196


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = -3

Query: 589 LSGSILIVGSRSARPVNVWRVKSGWGVIWFCRWS 488
           LSG  L +     R + +W    GW +     W+
Sbjct: 158 LSGKPLSINGALIRIIAIWLFSLGWTIAPMFGWN 191


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = -3

Query: 589 LSGSILIVGSRSARPVNVWRVKSGWGVIWFCRWS 488
           LSG  L +     R + +W    GW +     W+
Sbjct: 34  LSGKPLSINGALIRIIAIWLFSLGWTIAPMFGWN 67


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = +2

Query: 455 LRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPAT 565
           L  L   Y  N+ PT    TP    T  + R   P +
Sbjct: 41  LENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVS 77


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 615 PQILLITTAXIPFW 656
           P I+L+T++ I FW
Sbjct: 310 PGIILVTSSFITFW 323


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 615 PQILLITTAXIPFW 656
           P I+L+T++ I FW
Sbjct: 279 PGIILVTSSFITFW 292


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 615 PQILLITTAXIPFW 656
           P I+L+T++ I FW
Sbjct: 330 PGIILVTSSFITFW 343


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 615 PQILLITTAXIPFW 656
           P I+L+T++ I FW
Sbjct: 279 PGIILVTSSFITFW 292


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 633 LSVISAVLSLVAFFVCLGA 577
           L V+ +++ +++FF C GA
Sbjct: 55  LIVLGSIIFVISFFGCCGA 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,530
Number of Sequences: 438
Number of extensions: 3448
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)