Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15o20
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.73 
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   1.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.0  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 68  KMALNKILSNPALKDHNKME-LNEEWNNFMKRIGDVSNLVRDMASGDKKKADAAQVLADK 244
           K     I+ N A K  +K   +  E  +F + +G   +L  D   G+KK+     +L + 
Sbjct: 267 KSGKRNIIDNSAQKTESKTNNIVVEGVSFGQSVGLKDDLDIDDDVGEKKRQAFLDLLIEA 326

Query: 245 YLQGKVILDEEV 280
              G ++ D+EV
Sbjct: 327 GQNGVLLTDKEV 338


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 321 FLLITVLSSLIFMVTSSSSITFPCRYLSAKTWAA 220
           F  I V++ LIF+    + I   CR  S  +WAA
Sbjct: 7   FFFILVIT-LIFLYFGEADIKKDCRKESKVSWAA 39


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 134 RLVPFYCDLSMQDWIKSCLE 75
           +LVP  CDLS Q+ I   +E
Sbjct: 57  KLVPLQCDLSNQNDILKVIE 76


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 77  LNKILSNPALKDHNKMELNEEWNNFMKRIGDVSNLVRDMAS 199
           LNKI  NP L  H + +L  E     K I  V N + + A+
Sbjct: 573 LNKIGKNPNLVAHREEDLGSE----SKTINAVVNALAEQAA 609


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 77  LNKILSNPALKDHNKMELNEEWNNFMKRIGDVSNLVRDMAS 199
           LNKI  NP L  H + +L  E     K I  V N + + A+
Sbjct: 541 LNKIGKNPNLVAHREEDLGSE----SKTINAVVNALAEQAA 577


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 71  MALNKILSNPALKDHNKMEL 130
           M   KIL+ P +K+H K  L
Sbjct: 681 MLSEKILAEPLVKEHFKKAL 700


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,221
Number of Sequences: 438
Number of extensions: 3020
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)