Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15o19
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    28   1.1  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   2.5  
SPCC553.11c |||transcription factor TFIIA complex small subunit ...    27   3.3  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    26   4.4  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   5.8  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    26   5.8  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   7.7  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   7.7  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   7.7  
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    25   7.7  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   7.7  

>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 494 PLDKY*LKVTLRRPSKRYRTWTFCLTK 574
           P D Y  ++TLR PS  YR    CL K
Sbjct: 102 PKDDYKTRITLRSPSGSYRGSVVCLFK 128


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
 Frame = +1

Query: 94  DFDQYGNADLVDTSVIKE-GDGFVVVGSLELELDYNTGLNPT----------KVKTMDFY 240
           +FD++     VDT    E G G +V  +   ++  N G  P+           VKT+D Y
Sbjct: 121 EFDRHSQTGRVDTKKATERGWGDLVNSAANPDVAENEGNTPSGAQTPAAEEENVKTLDEY 180

Query: 241 LNAKKKVKTPALVGKAIVKYAKVSEYD 321
           L+ +K    P  VG+ + K    ++ +
Sbjct: 181 LSERKSAAKP--VGRTVEKLENATKVE 205


>SPCC553.11c |||transcription factor TFIIA complex small subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 107

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 537 EGLRNVTLSQYLSKGHL*FDAFIFQVWTDFIVNVSFQ 427
           E L     S+   KGHL    F  +VWT  I N SF+
Sbjct: 46  EALAEKVRSRLTFKGHLDTYRFCDEVWTFIIKNPSFR 82


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +1

Query: 289 IVKYAKVS--EYDAQFISISLKGGDFTLFAI 375
           IVK  K+S  +  AQF +  L+GG+F+ F +
Sbjct: 231 IVKQFKLSCSKMQAQFTTFELRGGNFSAFIV 261


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/71 (21%), Positives = 31/71 (43%)
 Frame = -3

Query: 422 LNFCVSLYNPLTSSGRIANSVKSPPLSDMLMNCASYSETLAYFTIAFPTKAGVFTFFLAF 243
           L + V   +PL ++  + N V+ PP S  +M   ++ E   +  +      G    F + 
Sbjct: 39  LEWSVVSTDPLQANVWLINEVEYPPTSRYIMTINTFDENATFPALDLSPGYGYQISFTSI 98

Query: 242 K*KSIVFTFVG 210
           +  S+++   G
Sbjct: 99  RDDSVIYAQSG 109


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 541 KIQDLDILFDKKRAQLCGVTNNCEP 615
           K +D D+L D      CG TN  +P
Sbjct: 385 KEKDFDVLVDHAMKDACGATNPIQP 409


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 289  IVKYAKVSEYDAQFISISLKGGDFTLFAILPDEVNGLYKLTQKFKSL 429
            +  Y K    +AQFI ISL+   F L + L     G+YK     KS+
Sbjct: 1272 VANYIKERTKNAQFIVISLRSNMFELSSRLV----GIYKTANMTKSV 1314


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/76 (26%), Positives = 34/76 (44%)
 Frame = +1

Query: 394  GLYKLTQKFKSLKTDVYNKISPYLEYKCVELQMPLGQILTQGDITEALKKIQDLDILFDK 573
            GL    ++F  +  +    I   +E K ++L +P G  L    +TE  +KI   + LF  
Sbjct: 1387 GLEDNPRRFLYMDEEELEMIVSEVEDKSLKLALPFGIALHHAGLTENDRKIS--EELFVN 1444

Query: 574  KRAQLCGVTNNCEPGV 621
             + Q+   T+    GV
Sbjct: 1445 NKVQILIATSTLAWGV 1460


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 329 NCASYSETLAYFTIAFPTKAGVFTFFLAF 243
           N + Y E +A F   F    G+F F LAF
Sbjct: 273 NSSEYLEFVATFMALFMIGLGIFNFCLAF 301


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 166 VGSLELELDYNTGLNPTKVKTMDFY 240
           V ++E   DYNT ++  KV  +DFY
Sbjct: 19  VNAVESFGDYNTRISADKVTVVDFY 43


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 472 KCVELQMPLGQILTQGDITEALKK 543
           KC+  Q+PL QIL    +  +L K
Sbjct: 752 KCIRAQVPLEQILDYNSVISSLTK 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,210
Number of Sequences: 5004
Number of extensions: 58544
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)