Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15o19
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 31 0.84
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 31 1.1
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 31 1.1
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 30 1.5
11_01_0750 - 6315126-6315896,6316371-6316784 29 2.6
10_08_1002 + 22160109-22160264,22160374-22160484,22160612-221606... 28 6.0
03_06_0368 - 33418918-33419031,33419132-33419530,33419680-334198... 28 6.0
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 28 6.0
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 31.1 bits (67), Expect = 0.84
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Frame = +1
Query: 214 TKVKTMDFYLNAKKKVKTPALVGKAIVKYAKVSEYD-AQFISISLK-GGD---FTLFAIL 378
+K K +F+L K V+ P + + K + YD + + + + GGD F+++ +L
Sbjct: 263 SKTKDGEFHLLDGKSVQAPFM---STSKKQYILSYDNLKVLKLPYQQGGDKRQFSMYILL 319
Query: 379 PDEVNGLYKLTQKFKSLKTDVYNKISPYLEYKCVELQMPLGQILTQGDITEALKKI 546
P+ +GL+ L +K S + + K P + + ++P +I + ++ LK +
Sbjct: 320 PEAQDGLWSLAEKLNS-EPEFLEKHIPTRQVTVGQFKLPKFKISFGFEASDLLKSL 374
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Frame = +1
Query: 214 TKVKTMDFYLNAKKKVKTPALVGKAIVKYAKVSEYDA-QFISIS-LKGGD---FTLFAIL 378
+K + +F+L + V+ P + + K +S YD+ + + + L+GGD F+++ +L
Sbjct: 515 SKTEDGEFHLLDGESVQAPFMSTR---KKQYLSSYDSLKVLKLPYLQGGDKRQFSMYILL 571
Query: 379 PDEVNGLYKLTQKFKS 426
P+ +GL+ L +K S
Sbjct: 572 PEAQDGLWSLAEKLNS 587
>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/73 (35%), Positives = 35/73 (47%)
Frame = +1
Query: 211 PTKVKTMDFYLNAKKKVKTPALVGKAIVKYAKVSEYDAQFISISLKGGDFTLFAILPDEV 390
PT + MD ++A K ++VG Y K DAQFI ISL+ F L D +
Sbjct: 1246 PTPLYVMD-EIDAALDFKNVSIVGH----YVKDRTKDAQFIIISLRNNMFE----LADRL 1296
Query: 391 NGLYKLTQKFKSL 429
G+YK KS+
Sbjct: 1297 VGIYKTDNCTKSI 1309
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 30.7 bits (66), Expect = 1.1
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
Frame = +1
Query: 214 TKVKTMDFYLNAKKKVKTPALVGKAIVKYAKVSEYDA-QFISISL-KGGD---FTLFAIL 378
+K K +F L K V P + + K +S YD+ + + + KG D F+++ +L
Sbjct: 55 SKTKDGEFRLLDGKSVLAPFM---STSKKQYLSSYDSLKVLKLPYQKGRDLRQFSMYILL 111
Query: 379 PDEVNGLYKLTQKFKSLKTDVYNKISPYLEYKCVELQMPLGQILTQGDITEALKKIQDLD 558
P+ +GL+ L K S + + K P + + ++P +I + G L KI L
Sbjct: 112 PEAQDGLWSLAAKLNS-EPEFLEKRIPTRQVTVGKFKLPKFKI-SFGFEASDLLKILGLQ 169
Query: 559 ILFDKKRAQLCGVTNNCE 612
+ F K A L G+ + E
Sbjct: 170 LPFSSK-ADLTGMVGSPE 186
>04_03_0985 - 21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 535 LKKIQDLDILFDKKRAQLCGVTNNCEPGVIKSFLTETYLVDKIIKEI 675
LK++ + I FD +C + NC PG + FL +D +I +
Sbjct: 867 LKRLNEDVIDFDLLEDLICYIDENCPPGAVLVFLPGVAEIDMLIDRL 913
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 358 FTLFAILPDEVNGLYKLTQKFKSLKTDVYNKISPYLEYKC-VELQMPLGQILTQGDITEA 534
F+++ LPD+ +GL++LTQK S + + KC V + +P +I Q D+ +
Sbjct: 242 FSMYIFLPDDHDGLFELTQKIFSEPMFLEQHLP---TEKCHVGISVPNFKISFQIDVKDF 298
Query: 535 LK 540
LK
Sbjct: 299 LK 300
>10_08_1002 +
22160109-22160264,22160374-22160484,22160612-22160689,
22160774-22160921,22161007-22161077,22161430-22161526,
22161603-22161790,22161960-22162223
Length = 370
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 248 LRKR*RHLLWSE-RQS*SMPRFRNTMHSSSAYRSREVTSHYSQFFPMRSM 394
L R + W Q+ MP F + M SSS + R+ S ++Q F ++++
Sbjct: 241 LNSRETYKKWENMNQAGDMPSFSHAMSSSSHHNKRQYASDHTQDFVVKAV 290
>03_06_0368 -
33418918-33419031,33419132-33419530,33419680-33419805,
33419880-33420096,33420178-33420272,33420840-33421060,
33421149-33421222,33421362-33421484,33421814-33421854,
33421933-33422134,33422245-33422504,33422669-33422798,
33423037-33423317
Length = 760
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 154 GFVVVGSLE--LELDYNTGLNPTKVK---TMDFYLNAKKKVKTPALVGKAIVKYAKVSEY 318
GFVVV + + T ++ +K K T DF + KKV + V + A V
Sbjct: 261 GFVVVSIADSFAPQEIGTRMSVSKAKAIFTQDFIIRGGKKVPLYSRVVQGTSSKAVVIPA 320
Query: 319 DAQFISISLKGGDFT 363
F+ +SL+ GD +
Sbjct: 321 TGGFLGVSLRNGDMS 335
>02_05_0672 +
30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 28.3 bits (60), Expect = 6.0
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 12/153 (7%)
Frame = +1
Query: 238 YLNAKKKVKTPALVGKAIVKYAKVSEYDAQFISISLKGGDFT----LFAILPDEVN---G 396
Y+ ++K++ G +I K+S+ +S +L+ DF LF ++P +
Sbjct: 393 YIEQQEKIRC----GLSINPEDKISQLKVVLMSATLQLKDFISNRRLFDVIPPAIKVPVR 448
Query: 397 LYKLTQKFKSLKTDVYNKISPYLEYKCVELQMPLGQILT----QGDITEALKKIQDLDIL 564
+ +T F D Y Y + + ++P G IL Q ++ KK+Q
Sbjct: 449 QFPVTVHFSKSTHDDYLG-QAYKKVMSIHKKLPQGGILVFVTGQREVDYLCKKLQRASKQ 507
Query: 565 -FDKKRAQLCGVTNNCEPGVIKSFLTETYLVDK 660
DKK ++ G N V++ ++E Y +D+
Sbjct: 508 QTDKKTEKVEGDENGSSQEVVEREISEAYDIDR 540
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,444,480
Number of Sequences: 37544
Number of extensions: 341098
Number of successful extensions: 780
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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