Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15o12
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   0.37 
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   6.1  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    24   6.1  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    23   8.1  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    23   8.1  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 304 FEERSCINLFFCFIHLV 254
           FE  S +N FFCF+H V
Sbjct: 788 FEINSILNFFFCFLHTV 804


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 216 IYYYYYVQHL 187
           +YYYY+V HL
Sbjct: 27  LYYYYFVSHL 36


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 311 FFFRRAKLYQFIFLFYSFSVHV 246
           FF R  KL   ++LFY  S +V
Sbjct: 121 FFIRFGKLGHCVYLFYCISTNV 142


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 213 YYYYYVQHLWKGT 175
           YY+YY   ++KGT
Sbjct: 283 YYFYYATQVFKGT 295


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 213 YYYYYVQHLWKGT 175
           YY+YY   ++KGT
Sbjct: 283 YYFYYATQVFKGT 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,173,349
Number of Sequences: 5004
Number of extensions: 20059
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)