Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15o12
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938...    29   1.0  
04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886...    27   3.1  
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083...    26   7.2  
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    26   7.2  

>02_05_0483 -
           29391929-29392256,29393048-29393148,29393640-29393834,
           29394124-29394240,29394376-29394447,29394840-29394950,
           29395029-29395127,29395991-29396047,29396607-29397008,
           29397249-29397303,29397725-29397809,29398023-29398130,
           29398229-29398295,29398717-29398875,29399277-29399405
          Length = 694

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 307 FFEERSCINLFFCFIHLVFMFK 242
           +F +  C+N FFCF  ++  FK
Sbjct: 564 YFRKNDCLNYFFCFRWVLIQFK 585


>04_03_0283 +
           13887388-13887573,13887711-13887806,13888517-13888637,
           13888734-13888840,13888949-13889166,13890219-13890396,
           13890492-13890611,13891601-13891687,13892401-13892511,
           13892618-13893439
          Length = 681

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 255 CSCLNV**QWLVIIYYYYYVQHL 187
           CS L +   W+V+I+  YY++H+
Sbjct: 69  CSNLTILLLWIVMIFLVYYIKHV 91


>07_03_1584 +
           27907345-27907357,27907693-27908039,27908202-27908319,
           27908653-27908705,27908808-27908978,27909447-27909643,
           27909729-27909807,27909954-27909992,27910202-27910321,
           27910417-27910518,27910654-27910737,27910832-27911074,
           27911156-27911281,27911365-27911439,27911534-27911605,
           27911807-27911926,27912075-27912172,27912643-27912802,
           27912867-27912980,27913029-27913121,27913122-27913319,
           27913404-27913497,27914032-27914192
          Length = 958

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 222 VIIYYYYYVQHLWKGTKKAAGRIIASRVLPKGSL 121
           VI ++YY   HL+    +AA      +V+ KG L
Sbjct: 427 VICFHYYIQYHLYMQLSEAAAYARKKKVILKGDL 460


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 189 LWKGTKKAAGRIIASRVLPKGSLKKILQIATIFY 88
           LWKGTK   G+++A+ +   G +  ++ +    Y
Sbjct: 754 LWKGTKSHRGKVLAAFLKAVGFIIPLMDVEYASY 787


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,604,743
Number of Sequences: 37544
Number of extensions: 103246
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)