Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15o07
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 32 0.079
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 27 1.7
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 3.9
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 3.9
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 3.9
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 26 5.2
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 26 5.2
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 26 5.2
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 5.2
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 9.0
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.0
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.0
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 9.0
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 31.9 bits (69), Expect = 0.079
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = +2
Query: 347 EQSESDFYKVGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPNLLTWSEKEQIRHLATT 526
E E+D K+ + EHL++ + E++ Q+ KEKY K+N +++ + R L+T
Sbjct: 85 EDEEAD--KIYQSVEEHLSKRRKSQREKQEQLQKEKYEKENPKVSSQFADLK--RGLSTL 140
Query: 527 QPDEW 541
++W
Sbjct: 141 TDEDW 145
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 362 DFYKVGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPNLLTWSEKEQIRHL 517
DF + + Y HL L E HQI+ YF +N+ + E ++HL
Sbjct: 129 DFVETEDFY--HLVMELAEGGELFHQIVNFTYFSENLARHIIIQVAEAVKHL 178
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 374 VGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPN 478
+G +Y +HL L + +Q ++I + QN PN
Sbjct: 393 IGMLYRKHLQIILQHRQQQLNKIQNARMNSQNAPN 427
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 290 AAFKRDGFKVDDEDAEEYVEQSESDFYKVGEVYNEHLNETLMGKYEQRHQIIKEKY 457
A +K + K + D V E DF+KV +V NE ++ E + +K+
Sbjct: 529 AEYKGESAKSSESDL--VVSDDEEDFFKVSKVANESISSNHEKLMESESDRLSKKW 582
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.2 bits (55), Expect = 3.9
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Frame = +2
Query: 380 EVYNEHLNE--TLMGKYEQRH----QIIKEKYFKQNMPNLLTWSEKEQIRHLATTQPDEW 541
+++N ++ + TL+GK Q ++ KE F Q+ L E E++RHLAT+ +++
Sbjct: 347 DIHNVNIKQITTLIGKMSQVQIECKRLRKENLFLQSERTHLL-RELEELRHLATSAKEDF 405
Query: 542 TP-EKL 556
EKL
Sbjct: 406 VKVEKL 411
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 98 FNAYIVEYYIQDYELQLLIIIPEEKMFTARLRHLCPSA 211
F+ +VE++IQ+++ + I I ++ RLR C A
Sbjct: 235 FDNALVEHFIQEFKRKQKIDISDDPRALRRLRSACERA 272
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 72 DSLFCFQVNSTHISWNIIYRTMN 140
+SLF + N +SW ++YR M+
Sbjct: 37 ESLFLQRKNPRRLSWTVLYRRMH 59
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 72 DSLFCFQVNSTHISWNIIYRTMN 140
+SLF + N +SW ++YR M+
Sbjct: 37 ESLFLQRKNPRRLSWTVLYRRMH 59
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +2
Query: 311 FKVDDEDAEEYVEQSESDFYKVGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPNLLTW 490
F V + A Y S S F K + + L G ++RHQ +K + Q NLL +
Sbjct: 210 FSVSESIANSYSNSSISAFTKWFDRVDA---SELPGSEKERHQSLKLQSQSQTSKNLLAF 266
Query: 491 SEKEQ 505
++ ++
Sbjct: 267 NDAQK 271
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.0 bits (52), Expect = 9.0
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Frame = +3
Query: 36 TLNILRKQTAILDSLFCFQVNSTHISWN--IIYRTMNYSY*LSSQKKKCSPLAYGICVQ- 206
TL++L+K + + L C +V I WN I + + + + +K L I +
Sbjct: 66 TLSLLQKMASWNNGLACVRVFQA-IDWNSKIFIKMLQLPNQIQNSRKGNKRLKITISKKR 124
Query: 207 -ALKLLSVTFETERG*THSDQIQVWTRELRHSNETALKLTTKMLKSMSNNQRVIFIKLVR 383
+L LL +TF +++ T E+R + KLTT + K + N++ + +L++
Sbjct: 125 SSLLLLFITF-----------LRLGTPEIRLEILNSRKLTTPLFKGIYNDEPSVLKELLQ 173
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +2
Query: 293 AFKRDGFKVDDEDAEEYVEQSESDFYKVGEVYNEHLNETLM-GKYEQ 430
A K K + D +EY Q E D Y+ + H LM G EQ
Sbjct: 824 ASKNVFIKPQEFDHDEYFSQEEEDIYRPENLIRNHQILGLMEGSLEQ 870
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 520 HNATRRVDSRKVS*KFSCYSTCSEKITQTCLEASY 624
HN+ + RK++ + + SEK+T + E SY
Sbjct: 949 HNSFSDIHHRKIAAHAAAITAASEKLTPSIEETSY 983
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.0 bits (52), Expect = 9.0
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +2
Query: 104 AYIVEYYIQDYELQLL 151
+Y+ YY +DYEL+++
Sbjct: 1818 SYLYSYYFEDYELEIV 1833
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,430
Number of Sequences: 5004
Number of extensions: 51828
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -