Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15o05
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    28   1.1  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   3.3  
SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||...    26   4.3  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   7.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   7.5  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   7.5  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    25   10.0 

>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 442 NYVRRVTRWA*KPWSCWMNRANNWTESRRAW 534
           N ++ V   A K W  W  +  +W  SR+ W
Sbjct: 414 NKLKLVPSLARKEWDSWFKKMGDWCISRQIW 444


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 10  SNSYTKTKLFYLSSTNQNLE 69
           S++ TKT  FY SST +NL+
Sbjct: 124 SSTPTKTATFYTSSTTENLD 143


>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 348 ENGGPRSELEQLQMRAGQVTD-ESLESTRRMMQLCEESHEVGMKTLVMLDEQGEQLDRIE 524
           E+G       +L     +  D +  ++  R+ Q  +E+ +V  KT+  +  +GE+LD + 
Sbjct: 111 ESGAVTLSFPELDTYLSKYQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLI 170

Query: 525 EGMDQINADMR 557
           +  D ++   R
Sbjct: 171 QRSDNLSTQSR 181


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 471 CPPRDSPHIVASYALWTPTTH 409
           CPP D      S  +W P TH
Sbjct: 425 CPPLDKQFPFESRKIWFPVTH 445


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 548 RVDLVHALLDSVQLFALFIQHDQ 480
           R D+VHAL    + FA+F Q  Q
Sbjct: 173 RADIVHALSRDKEFFAMFAQFVQ 195


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 189 WSMRLATKCAMP*LCALTFYANKHARI 109
           WS  LAT   +P +CALTF+   H  I
Sbjct: 416 WSALLAT---VPEMCALTFFGILHVPI 439


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 452 GESRGGHENPGHAG*TGRTIGQNRGGHGPDQRG 550
           G SRGG       G  G + G +RGG     RG
Sbjct: 156 GNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRG 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,491
Number of Sequences: 5004
Number of extensions: 38905
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)