Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15o04
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0491 + 18043087-18043548                                         31   0.55 
11_06_0527 + 24672649-24672707,24673459-24673817,24674366-246744...    30   1.7  
06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615           29   2.2  
08_01_0100 - 714244-715461                                             28   5.1  
06_03_0542 + 21959533-21959785,21960732-21960846,21962815-219629...    28   5.1  
02_02_0075 - 6572385-6572558,6573416-6573607,6574553-6574630,657...    28   5.1  
07_03_1336 - 25868238-25868284,25868731-25869079                       28   6.8  
03_05_0365 + 23502925-23502929,23503288-23503453,23504597-235047...    28   6.8  
10_08_0338 + 16916429-16916650,16916728-16917900                       27   8.9  
03_05_0641 - 26341903-26342199,26342292-26342378                       27   8.9  
02_05_1248 - 35237036-35237252,35237843-35239491                       27   8.9  
01_07_0317 + 42699035-42699305,42699411-42700132                       27   8.9  

>09_04_0491 + 18043087-18043548
          Length = 153

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 165 CGAHASGWAGPPANIALSQDGRNILDTPEVAQARAAHISALQQASKNNPNPNDDGSYD 338
           C ++ SGW    A+   S D R I+      +  +   +  ++  +N  + NDDG YD
Sbjct: 14  CNSNESGWTMYLASPTHSDDVRAIVSEGSNVEDGSGFSNERRRGKENKGHANDDGDYD 71


>11_06_0527 +
           24672649-24672707,24673459-24673817,24674366-24674435,
           24674656-24674730,24674731-24674846,24674975-24675006,
           24675117-24675242,24675379-24675537,24675886-24675978,
           24676069-24676236,24676388-24676486,24676603-24676820,
           24676900-24676957,24677421-24677509,24677590-24677721,
           24678000-24678122,24678568-24678666,24678774-24678965,
           24679127-24679298,24679416-24679572,24679704-24679906,
           24680105-24680246,24680324-24680484,24680585-24680701,
           24680788-24680874
          Length = 1101

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 96  QIRIFSIRISNLQKIVVACL--ALACGAHASGWAGPPANIALSQ 221
           ++ +++++ SNL++I+  C     AC A    W G   ++ LSQ
Sbjct: 430 EMAVYALQCSNLKRILPICTDWESACWAMTKSWLGVQVDLVLSQ 473


>06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615
          Length = 390

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 186 WAGPPANIALSQDGRNILDTPEVAQARAAHISALQQ 293
           W+  P+++  S+DGR  +   E++ A +AHI  + +
Sbjct: 289 WSEIPSDVESSRDGRRYISGEELSDADSAHIVVMDK 324


>08_01_0100 - 714244-715461
          Length = 405

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +1

Query: 184 VGPAHPPTLLCLKMDAIFWTHPKSHRLVPHTFPLFSRLRKITPTQMT-TDHTTLDG 348
           VGPAH        +D + WT P+    V   F LF   R + P  +   DH    G
Sbjct: 313 VGPAHRLPFFDGTLDIVHWTSPEHVAGVMLEFALFDIYRVLRPGGLLWLDHFVFPG 368


>06_03_0542 +
           21959533-21959785,21960732-21960846,21962815-21962923,
           21963027-21963104,21964200-21964391,21964995-21965168
          Length = 306

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 245 CVQNIASILRQSNVGGWAGPTGRVCAARQRQTSYYDLL*IRNTDRENPDLNY-FLVDMVD 69
           C Q  A ++ + NV     P   VC     Q  +YDL+ +     ++PD NY F+ D VD
Sbjct: 29  CEQAKAILMEEWNVQPVRCPV-TVCGDIHGQ--FYDLIELFRIGGDSPDTNYLFMGDYVD 85

Query: 68  LCVYSL 51
              YS+
Sbjct: 86  RGYYSV 91


>02_02_0075 -
           6572385-6572558,6573416-6573607,6574553-6574630,
           6574712-6574820,6575442-6575556,6576280-6576535
          Length = 307

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 245 CVQNIASILRQSNVGGWAGPTGRVCAARQRQTSYYDLL*IRNTDRENPDLNY-FLVDMVD 69
           C Q  A ++ + NV     P   VC     Q  +YDL+ +     E PD NY F+ D VD
Sbjct: 30  CEQAKAILMEEWNVQPVRCPV-TVCGDIHGQ--FYDLIELFRIGGEAPDTNYLFMGDYVD 86

Query: 68  LCVYSL 51
              YS+
Sbjct: 87  RGYYSV 92


>07_03_1336 - 25868238-25868284,25868731-25869079
          Length = 131

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 138 IVVACLALACGAHASGWAGPPANIALSQDGRNI 236
           +VVA LALACGA +   A  PA    S  G +I
Sbjct: 9   VVVAVLALACGAASQSPAPAPAAGPASDCGSSI 41


>03_05_0365 +
           23502925-23502929,23503288-23503453,23504597-23504796,
           23504814-23505144
          Length = 233

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 272 CGTSL-CDFGCVQNIASILRQSNVGGWAGPTGRVCAARQRQTSYYDL 135
           CG  L C +  V     +++Q+ +GGW G +G+  A +Q   ++  L
Sbjct: 35  CGLPLPCPY-IVSTHHYLIKQNQLGGWRGSSGQQLAVQQDAAAHSSL 80


>10_08_0338 + 16916429-16916650,16916728-16917900
          Length = 464

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 297 SKNNPNPNDDGSYDPRWDNEEYWQQAEG 380
           S N PN N  G YD R D   Y Q  +G
Sbjct: 228 SNNGPNSNS-GGYDSRGDASRYGQAQQG 254


>03_05_0641 - 26341903-26342199,26342292-26342378
          Length = 127

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 217 DRAMLAGGPAQPDACAPHANAK 152
           DRA  AGG A PD+   H+N K
Sbjct: 91  DRAAAAGGRAMPDSYDDHSNYK 112


>02_05_1248 - 35237036-35237252,35237843-35239491
          Length = 621

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 132 QKIVVACLALACGAHASGWAGPPANIALSQDGRNILD-TPEVA-QARAAHISALQQA 296
           +++ +AC+ L     ASG A P   +AL+     IL+ TP  A    A+H  A+  A
Sbjct: 90  KRLALACIKLGQHLEASGAADPSRVLALALRSLGILEATPNSATSTTASHSDAVSLA 146


>01_07_0317 + 42699035-42699305,42699411-42700132
          Length = 330

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 392 CSRSCLERCPRPLMERCPCCCSF 460
           C   C +RCP   +  CP C +F
Sbjct: 67  CMAKCDKRCPNQCIVMCPSCKTF 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,074,659
Number of Sequences: 37544
Number of extensions: 234140
Number of successful extensions: 826
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)