Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15o02
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    28   0.97 
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   1.7  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   2.2  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    27   2.2  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   2.2  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    27   3.0  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   3.9  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   3.9  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   3.9  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   6.8  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   9.0  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   9.0  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   9.0  
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce...    25   9.0  

>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 225 NLQVQKKKYMQELIKTVENRIIEIKNELQNLECSQ 329
           +L++   K  Q+LIKT+E+ + +I+NE  +L   Q
Sbjct: 337 DLKLACVKEKQQLIKTLESSLTQIRNERDSLVAKQ 371


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
 Frame = +3

Query: 210 ECL---HNNLQV---QKKKYMQELIKTVENRIIEIKNELQNLECSQCHFVGNGVAREILT 371
           ECL   HN ++     KK   + + K +E   + +   +  +      F    ++   L 
Sbjct: 90  ECLVTYHNGIRAIYNTKKNEAKNMYKEIERLSVILGESVDEVNFVNGDF--EDISDIKLE 147

Query: 372 PDNTQLNDLPLVFKRCDEIETLIKETYKKIQGKKAIDDLTKPKDDQS 512
             + +LN+L  +++   E    IKE  KK+Q   +I  L+ P DD S
Sbjct: 148 QLSAKLNELHQIYRLRKEKNIEIKEELKKLQDSLSI-KLSMPADDLS 193


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 411  KRCDEIETLIKETYKKIQGKKAID-DLTKPKDDQSIKNKTLVKA 539
            KR D++E  + E   ++ G++ ++ D  K K ++  KNK  VKA
Sbjct: 1089 KRVDQLEEALNEKLARLVGEQMVEGDKEKDKTNEE-KNKDEVKA 1131


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 279 NRIIE-IKNELQNLECSQCH 335
           NR++E IKNEL++  C  CH
Sbjct: 133 NRLLEKIKNELESFRCLCCH 152


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 411  KRCDEIETLIKETYKKIQGKKAID-DLTKPKDDQSIKNKTLVKA 539
            KR D++E  + E   ++ G++ ++ D  K K ++  KNK  VKA
Sbjct: 1089 KRVDQLEEALNEKLARLVGEQMVEGDKEKDKTNEE-KNKDEVKA 1131


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 483 DLTKPKDDQSIKNKTLVKAINWWEDDYESDLSQIS 587
           DL +  ++ +++ K     +++W +D + D+S IS
Sbjct: 66  DLLRSYENVAMERKECANQLSYWGEDCDDDISDIS 100


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 33   KMSSNFYFIKWKNVLNSLEALLRTDLN 113
            K+  N Y   W N+  SL  LL TD N
Sbjct: 1444 KILLNIYEKSWLNIAESLTILLSTDAN 1470


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = +3

Query: 66  KNVLNSLEALLRTDLNYQKKAHDKQLCEAVLRLSSVLARYSALYNEASECLHNNLQ--VQ 239
           K +   +E   R    ++ K+ + Q    V  L   L    +LYN  +E L+NN Q  + 
Sbjct: 275 KELEEEVETQKRLTALWESKSSELQ--SEVAALQEKLTSQQSLYNNVTEELNNNKQQLLI 332

Query: 240 KKKYMQELIKTVENRIIEIKNELQNLECSQCHFVG 344
            +  ++EL +  ++ + E++   +N   S    VG
Sbjct: 333 SENSLRELQEKYDSVVSELQVVKENKNTSVSAGVG 367


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 231 QVQKKKYMQELIKTVENRIIEIKNELQNLECSQCHFVGNGVAREILTPDNTQLN-DLPL 404
           +V   K      + +  + +     + +LEC +CH   + VA +    D+  LN  +PL
Sbjct: 109 KVSSSKICASCGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPL 167


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +3

Query: 438 IKETYKKIQGKKAIDDLTKPKDDQSIKNKTLVKAINWWEDDYESDLSQISLEKD 599
           + ET + +    +IDDLTK KD+     +T++ A+ W   D   DL + +L  D
Sbjct: 36  LPETTEDVFHLMSIDDLTKVKDNAPENLQTII-AVLW---DKLEDLQKETLFDD 85


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
 Frame = +3

Query: 195  YNEASECLHNNLQVQKKKY------MQELIKTVENRIIEIKNELQNLECSQCHFVGNGVA 356
            + +    L N +  +K++       ++ + K +E     I N  QN E  +         
Sbjct: 815  FTKQKSLLENRISFEKQRVSDTRLRLERMHKFIEKDQESIDNYEQNREALESEVATAEAE 874

Query: 357  REILTPDNTQLNDLPLVFKRCDEIETLIKETYKKIQGKKAIDDLTKPKDDQSIKNKTLVK 536
             E+L  D    N       + ++I  L+  + KK+ GK+ + +LTK   + ++    + +
Sbjct: 875  LELLKEDFASENS------KTEKI--LLAASEKKLVGKRLVSELTKLSGNITLLESEIDR 926

Query: 537  AINWW 551
             ++ W
Sbjct: 927  YVSEW 931


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +3

Query: 384 QLNDLPLVFKRCDEIETLIKETYKKIQGKKAIDDLTKPKDDQSIKNKTLVKAINWWEDDY 563
           QLND   ++++  + E L    +KKIQ  K  +DL +  D      K  ++++N   D Y
Sbjct: 246 QLNDFIALYEK--DREQLHSRDWKKIQLAKTQNDLGEFLDYIISNYKVPIESLNQPSDQY 303


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 66  KNVLNSLEALLRTDLNYQKKAHDKQLC-EAVLRLSSVLARYSALYNEASECLH 221
           KNVLN L+ L +   NY     D+ L  + +L     L  Y+ L +      H
Sbjct: 211 KNVLNKLDDLSKRSKNYPNLVIDRNLYKDFLLNRDMFLIAYNKLKSNPGMMTH 263


>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 399 PLVFKRCDEIETLIKETYKKIQGKKAIDDLTKPK 500
           P   KR ++ + +  + YK ++G KA+D   + K
Sbjct: 132 PFYLKRNEQKKLIQMDKYKSMEGTKALDKYIEKK 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,918
Number of Sequences: 5004
Number of extensions: 46278
Number of successful extensions: 180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)