Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15o01
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0521 + 21724447-21724594,21724795-21725342                       30   1.8  
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161...    29   3.1  
09_04_0640 - 19166953-19167285,19167631-19168449,19169057-191691...    29   4.1  

>06_03_0521 + 21724447-21724594,21724795-21725342
          Length = 231

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +1

Query: 343 PPAPLKYIHTLSHWKPDGRVSVDLFVRPKDVVRTNPRDVQQRYITIPNIRAPYVSPEW 516
           PP P+K  + L   +P+GR   +    P+D++   PR++QQR   I +  +  + P W
Sbjct: 17  PPNPIKPNYDLPRRQPEGRPRTE----PQDLL-IEPRELQQRGDFILHSHSCLLCPTW 69


>03_01_0204 +
           1611837-1611840,1611926-1612048,1614570-1614659,
           1615529-1616095,1616235-1616959,1617065-1617252,
           1617331-1617778
          Length = 714

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
 Frame = -1

Query: 500 YGALI--FGIVIYLCCTSLGF 444
           +GA++  FG++IY+CC  +GF
Sbjct: 595 FGAILSTFGVIIYVCCFVMGF 615


>09_04_0640 -
           19166953-19167285,19167631-19168449,19169057-19169163,
           19170070-19170154
          Length = 447

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
 Frame = -1

Query: 590 ASQNSLFGSANALNCLPSHETDSILHSGDTYGALIFGIVIYLCCTSL-------GFVLTT 432
           A Q S+FGS++ +  +P H  +  L S    G      ++ L C  L          L T
Sbjct: 343 AEQESIFGSSSLMRQIPEHRYE-YLKSVTINGFCSAKSMVELTCHILENAASLEHLTLNT 401

Query: 431 SLGLTNRSTET 399
           +LGL NRS ++
Sbjct: 402 NLGLANRSEQS 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,163,463
Number of Sequences: 37544
Number of extensions: 300776
Number of successful extensions: 680
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)