Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15o01
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41032-6|AAA82371.2|  165|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U00048-15|AAB53835.2|  597|Caenorhabditis elegans Lethal protein...    28   4.9  
Z70270-8|CAA94229.2|  358|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U41032-6|AAA82371.2|  165|Caenorhabditis elegans Hypothetical
           protein B0302.5 protein.
          Length = 165

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +1

Query: 385 KPDG----RVSVDLFVRPKDVVRTNPRDVQQRYITIPNIRAPYVSPEWRMESVSWDGRQL 552
           KP G    ++S DLF RP  V   N  DV++   + P  R   ++       +S+  R  
Sbjct: 51  KPQGPKRPQLSSDLFNRPMTVPEENSEDVEEAQTSQPETRKVEMNNN-NNYKISYTSRPP 109

Query: 553 RAFAEPNKEFWLAK-TPQCQ 609
               +P + + L + TPQ Q
Sbjct: 110 LPPQQPKQTYTLQRTTPQAQ 129


>U00048-15|AAB53835.2|  597|Caenorhabditis elegans Lethal protein
           721 protein.
          Length = 597

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 352 PLKYIHTLSHWKPDGRVSVDLFVRPKDVVRTNPRDVQQRYITIPNIRAP 498
           P+K    + + KPDG+++ DL +    +  TN  + Q  ++T+ N + P
Sbjct: 477 PVKDAKEIDYPKPDGKLTFDL-LTSVSLTGTNHTEDQPAHLTLKNDQVP 524


>Z70270-8|CAA94229.2|  358|Caenorhabditis elegans Hypothetical
           protein C53D6.7 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 463 QRYITIPNIRAPYVSPEWRMESVSWDGR 546
           + Y+ + NI   YV+ + R+ +VSW+G+
Sbjct: 195 KHYVPMSNISHIYVTGDVRLYAVSWEGK 222


>U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical
           protein C43H6.4 protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 217 YWTLYYLNKNNVNQKVYLE 161
           YW ++ LN NN  ++++LE
Sbjct: 560 YWPIFQLNNNNDQERIHLE 578


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,610,648
Number of Sequences: 27780
Number of extensions: 277893
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)