Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15n21
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    30   0.26 
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    29   0.59 
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    28   1.0  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    28   1.0  
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    28   1.4  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    28   1.4  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    27   1.8  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    27   3.1  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   3.1  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    26   4.2  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   5.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   7.3  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   7.3  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   7.3  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   7.3  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    25   7.3  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.6  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   9.6  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +2

Query: 116 NPVQNQFE-DQQSTPVYDLLKSVMDHDTDLQTSTSVYESYKNDGKIRENNEISTDALKTK 292
           NP  N+ +  QQST       S   + T LQT+T+  ++   +        ++T     +
Sbjct: 247 NPTANKTDASQQSTESTSSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNTSPQ 306

Query: 293 LENTIRNSKILAET 334
           + +TI +S  + E+
Sbjct: 307 ISSTISSSSFIVES 320


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 29  SRAKMNSIVKYIFLFAIHTSSSDWVSDWMNPVQNQFEDQQSTPVYDLLKSVMDHDTDLQT 208
           S+    S+   +   A  +SSS   S+ ++    +F D  S  +YDL KS++  +T+L  
Sbjct: 24  SKDAATSLASRVLTIAKGSSSSTEFSNALHTF-GRFSDNDSVLIYDLCKSIIGLETNLGI 82

Query: 209 S 211
           S
Sbjct: 83  S 83


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = +2

Query: 266 ISTDALKTKLENTIRNSKILAETLKTQIDVITARENAL--KDAIANGRFGVT-LATVSTL 436
           +ST    T LE T +N+  + E L   +DV       L  + A A    G   LA +S L
Sbjct: 47  VSTVHGNTTLEFTTKNALAVMELLNQDVDVHAGAAKPLMRESAFATHIHGTNGLAGISLL 106

Query: 437 GQVPRSYIIRDGRWTLCTSQIQTSAEPLT 523
              P+     D  + + T+ I    EP+T
Sbjct: 107 PDYPKKKATPDAVFAMYTT-ISNYPEPVT 134


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = +2

Query: 164 DLLKSVMDHDTDLQ----TSTSVYESYKNDGKIRENNEISTDALKTKLENTIRNSKILAE 331
           D  K+V D     Q    T+  + ++++ D   R     S ++   + E  + N K+ +E
Sbjct: 42  DYEKNVSDKTIQFQKLQMTAKEIIDAFERDSTQRTLQIESLESKIGEQERDLNNEKLASE 101

Query: 332 TLKTQIDVITARENALKDAIANG 400
           TL+ +  ++     ALK  + NG
Sbjct: 102 TLREKTQLLEKENGALK--VENG 122


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 248 IRENNEISTDALKTKLENTIRNSKILAETLKTQIDVITARE 370
           +   NE++  ALK +L  ++R  +   ETLK    ++ AR+
Sbjct: 127 VNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLVKARK 167


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 164 DLLKSVMDHDTDLQTSTSVYESYKNDGK 247
           D+ +++ DH+  LQT   +Y SY N+ +
Sbjct: 611 DVHRAICDHNEYLQTQLQIYGSYLNNAR 638


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +2

Query: 35  AKMNSIVKYIFLFAIHTSSSDWVSDWMNPVQNQFEDQQSTPVYDLLKSVMDHDTDLQTST 214
           +KMNS    + +F      +D   D+   +Q +        VY+LL  +MD      T T
Sbjct: 71  SKMNSDAMEMLVFL--RKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDFGFPQTTET 128

Query: 215 SVYESY 232
            + + Y
Sbjct: 129 KILQEY 134


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
 Frame = +2

Query: 122 VQNQFED--QQSTPVYDLLKSVMDHDTDLQTSTSVYESYKNDGKI-RENNEISTDALKT- 289
           +Q  F D  +QS    +LL   +D    LQ      E   N+  + +E NE +   LK  
Sbjct: 45  LQKSFLDALKQSATDSELLHKNLDEIKFLQN-----EKLNNEKLLEQEQNEANDYRLKVE 99

Query: 290 KLENTIRNSKILAETLKTQIDVITARENALKDAIANGRFGVTLATVST 433
           +LE+ I +      +L +Q+ +  +     +DA++  R   +L TVS+
Sbjct: 100 RLEHKISDYVQEINSLNSQLQIQKSNPEKHEDAVSQNRLRGSLDTVSS 147


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +2

Query: 110 WMNPVQNQFEDQQSTPVYD--LLKSVMDH-DTDLQTSTSVYESYKNDGKIRENNEISTDA 280
           W+  V  ++    STPV    +  +  +  DT +QTS+++Y+S  +   I+ ++ +   +
Sbjct: 470 WVTEVFTRYLGDDSTPVTSSSIFSTATEATDTSVQTSSAIYDS-SSTSNIQSSSSVYASS 528

Query: 281 LKTKLENTIRNS 316
                 N++ +S
Sbjct: 529 TGALSSNSLSSS 540


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 194 TDLQTSTSVYESYKNDGKIRENNEISTDALKTKLENTIRNSKILAETLKTQID-VITARE 370
           T+++  T+ Y+S   DGK       S+D +  +LEN      I     + ++   I AR 
Sbjct: 496 TNVRDLTTGYDSSSTDGKATLPVSKSSDNVTFELENGEVIMTIRTSGTEPKLKFYICARG 555

Query: 371 NALKDAIAN 397
           ++L+D+I N
Sbjct: 556 HSLEDSIKN 564


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 657 VFKHK*SSSTYNSRRCVGIVSYLITELKA 571
           V+ H+ ++  Y+S  C+GI SY +   KA
Sbjct: 305 VYSHR-TAEGYSSNSCLGIPSYFLNPQKA 332


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 657 VFKHK*SSSTYNSRRCVGIVSYLITELKA 571
           V+ H+ ++  Y+S  C+GI SY +   KA
Sbjct: 305 VYSHR-TAEGYSSNSCLGIPSYFLNPQKA 332


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 227  SYKNDGKIRENNEISTDALKTKLENTIRN 313
            S+ +   +R ++  STDAL + L NT+ N
Sbjct: 1327 SFTSLNGLRTDSADSTDALNSNLNNTVEN 1355


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 475 MDSLHLADTNISGTFNRTAMYWTRGISQ 558
           + SLHL+ T I   F     Y  +GISQ
Sbjct: 419 LGSLHLSITKIKSLFYERKEYTAKGISQ 446


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 146 QSTPVYDLLKSVMDHDTDLQTSTSVYE 226
           + TPV     S++DH + L TS+S +E
Sbjct: 539 EHTPVLKHTSSLLDHHSPLATSSSEHE 565


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/73 (23%), Positives = 33/73 (45%)
 Frame = +2

Query: 104 SDWMNPVQNQFEDQQSTPVYDLLKSVMDHDTDLQTSTSVYESYKNDGKIRENNEISTDAL 283
           SD+   + N F         DLL++ +   +  + ST+V E + +  +  ++ + ST+ L
Sbjct: 71  SDFSKLIDNSFNVFAKKNEGDLLQNAIYELSQAEGSTNVNEVWNDITEDMQSQDFSTEDL 130

Query: 284 KTKLENTIRNSKI 322
           K        N K+
Sbjct: 131 KQLFLLIFNNGKL 143


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 197 DLQTSTSVYESYKNDGKIRENNEISTDALKTKLENTIRNSKILAETLK 340
           +L+ S + +++     K  EN  +  DAL TK++   +    L E L+
Sbjct: 125 NLENSLAEFKALDVKEKKMENRRLVFDALSTKIQKAKKEESKLEEDLR 172


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +2

Query: 104 SDWMNPVQNQFEDQQSTPVYDLLKS---VMDHDTDLQTSTSVYESYKNDGKIRENNEIST 274
           +D+   + N F D+  TP    +++   +M +          +    +  K  E  E  T
Sbjct: 291 NDFTKEINNNFPDRSETPTLQTIEAPTKLMKYTRRKSLFRFPFFRSISGKKKEEPMESGT 350

Query: 275 DALKTKLENTIRNSKILAETLKTQI 349
           D+L++       +S++  + L+TQI
Sbjct: 351 DSLESSTAQITVDSQLKIKQLETQI 375


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
            Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 572  AFNSVIKYETIPTQRRLLYVEDDYLCLK 655
            A  S+I  E +P  R L+ V  DY+C+K
Sbjct: 941  ATRSIIDQE-VPAARDLMAVHRDYVCVK 967


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,490
Number of Sequences: 5004
Number of extensions: 59245
Number of successful extensions: 209
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)