Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15n19
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.6  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   6.4  
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    25   8.5  

>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 219 PEIITLSFIIHLQNVFCFVMEFVILSDKV 133
           P ++TLSFI + QN+ C  +E   +++KV
Sbjct: 356 PVLVTLSFINNWQNLICRRLEKQTVNEKV 384


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -2

Query: 219 PEIITL-SFIIHLQNVFCFVMEFVILSDKVYSPYRCNTSIFFVQECVYFIKFSLTFGQVI 43
           P IITL +  I++ N   + M   I    +YS + C+ + FF      +I     F   I
Sbjct: 254 PYIITLHNQYIYIWNKETYAMIQQIGISNIYSTFSCHKNTFFTSNSYVWILTPEDFSNQI 313

Query: 42  IYLIRNSFFSHELS 1
             L+     +  +S
Sbjct: 314 EALLNTENLNEAIS 327


>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -2

Query: 558 SFFFSVNYIYHSFVFFRETDLHLIVGPVSIHVLVRFPRSQFTAATHLHPHHFLCWY 391
           +F FS+  I H  V      L++  G  +  ++ R P     A    H  HF  WY
Sbjct: 117 TFNFSMQAIDH-IVNSAARTLYMSGGIQACPIVFRGPNGPAAAVAAQHSQHFAPWY 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,875
Number of Sequences: 5004
Number of extensions: 50766
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)