Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15n19
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   4.0  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   4.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.2  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 146 YPIKFIHPIDAIPVYFLYRN 87
           + I FIH I  I + F+Y N
Sbjct: 5   FSIMFIHSIFLILIIFIYSN 24


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 146 YPIKFIHPIDAIPVYFLYRN 87
           + I FIH I  I + F+Y N
Sbjct: 5   FSIMFIHSIFLILIIFIYSN 24


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 209 MISGPCCY*VMTGNLTSQSEGHQSS 283
           MISG  CY +  G+ T+  +   SS
Sbjct: 360 MISGATCYALFLGHATNLIQSLDSS 384


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 209 MISGPCCY*VMTGNLTSQSEGHQSS 283
           MISG  CY +  G+ T+  +   SS
Sbjct: 328 MISGATCYALFLGHATNLIQSLDSS 352


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 478 RVYTCVSSLPALTIHCCDAS 419
           +VY+C++  PA ++H  D +
Sbjct: 77  QVYSCLARSPAGSVHSRDVN 96


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = -2

Query: 219 PEIITLSFIIHLQNVFCFVMEFVILSDKVYSPYRCN-----TSIFFVQECVYFIKFSLTF 55
           P ++ L       +   FVME+V   D +Y   +C       ++F+  E    + F    
Sbjct: 45  PFLVQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQCGKFKEPVAVFYASEIAIGLFF--LH 102

Query: 54  GQVIIY 37
           G+ I+Y
Sbjct: 103 GRGIVY 108


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 368 DNYLWEIKYQHRKW 409
           +NY WE K  H  W
Sbjct: 186 ENYNWEHKETHIDW 199


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/37 (21%), Positives = 19/37 (51%)
 Frame = -3

Query: 488 LLDPCLYMC*FASRAHNSLLRRIFIHTTFYVGI*FPI 378
           ++DP   M  + +R  N L+   ++  ++ +   +PI
Sbjct: 788 IIDPAKAMHHYPTREDNLLVCNSYVDASYMIAFAYPI 824


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,067
Number of Sequences: 438
Number of extensions: 3432
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)