Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15n06
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0663 + 4975950-4977688,4978183-4978528                           29   2.7  
08_02_1333 + 26215545-26215759,26217315-26217372,26218263-262183...    27   6.2  
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638...    27   8.2  

>07_01_0663 + 4975950-4977688,4978183-4978528
          Length = 694

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
 Frame = +3

Query: 204 GHKVQFGNTLIG----LFKRGW---WEIPEIMGSTGLALVGIGLGIMGMYNYVKNDCENT 362
           GH+ +F NT  G    L +R +   W  PE+  S  + LV +G+ +  M+   ++D +  
Sbjct: 411 GHRGKFANTYGGEVWVLMRRNFTNIWRTPELFLSRLMVLVAMGVLMATMFTKPRDDDQGV 470

Query: 363 EFKKVYFI 386
             +  +F+
Sbjct: 471 TERLSFFV 478


>08_02_1333 +
           26215545-26215759,26217315-26217372,26218263-26218342,
           26218606-26218639,26218756-26218896
          Length = 175

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 19  RK*SIHQISCIKYFEDKSKADLPLYSLN 102
           R+  +HQ +  KY ++K KA++ +YSL+
Sbjct: 71  RRRYMHQANMHKYVDNKGKANVAIYSLH 98


>01_07_0353 +
           42962769-42962972,42963062-42963138,42963571-42963817,
           42963907-42964476,42964998-42965171,42965514-42965640,
           42965719-42965828,42966707-42966907,42966999-42967966,
           42968110-42968358,42968760-42969105
          Length = 1090

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 223 VIHSLDYLKEAGGRFLKLWVLQDW 294
           ++HSLD +KE   R L +W+  ++
Sbjct: 508 LVHSLDKIKEPAARSLIIWIFGEY 531


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,141,969
Number of Sequences: 37544
Number of extensions: 210965
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)