Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15n02
(512 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC010543-1|AAH10543.1| 212|Homo sapiens MED8 protein protein. 50 4e-06
BC010019-1|AAH10019.3| 179|Homo sapiens mediator of RNA polymer... 50 4e-06
AL139289-6|CAI23382.1| 179|Homo sapiens mediator of RNA polymer... 50 4e-06
AL139289-5|CAI23381.1| 212|Homo sapiens mediator of RNA polymer... 50 4e-06
AF521562-1|AAM76709.1| 268|Homo sapiens mediator of RNA polymer... 50 4e-06
>BC010543-1|AAH10543.1| 212|Homo sapiens MED8 protein protein.
Length = 212
Score = 50.4 bits (115), Expect = 4e-06
Identities = 48/143 (33%), Positives = 61/143 (42%), Gaps = 24/143 (16%)
Frame = +1
Query: 121 AIITSSLSHKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVG 300
A I + + K I K+ S++ E ISK + E +R + T N DT+ALV AV
Sbjct: 40 ARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPN--KQTFNPTDTNALVAAVA 97
Query: 301 TGKGLR---------PGMANMVGQXXXXXXXXXXXXXQLGPAPSTLP------------- 414
GKGL PG A G Q+ APS
Sbjct: 98 FGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQ 157
Query: 415 --KAPSAIKTNIKAANQIHPYQR 477
K PS IKTNIK+A+ +HPYQR
Sbjct: 158 PGKMPSGIKTNIKSAS-MHPYQR 179
>BC010019-1|AAH10019.3| 179|Homo sapiens mediator of RNA polymerase
II transcription, subunit 8 homolog (S. cerevisiae)
protein.
Length = 179
Score = 50.4 bits (115), Expect = 4e-06
Identities = 48/143 (33%), Positives = 61/143 (42%), Gaps = 24/143 (16%)
Frame = +1
Query: 121 AIITSSLSHKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVG 300
A I + + K I K+ S++ E ISK + E +R + T N DT+ALV AV
Sbjct: 40 ARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPN--KQTFNPTDTNALVAAVA 97
Query: 301 TGKGLR---------PGMANMVGQXXXXXXXXXXXXXQLGPAPSTLP------------- 414
GKGL PG A G Q+ APS
Sbjct: 98 FGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQ 157
Query: 415 --KAPSAIKTNIKAANQIHPYQR 477
K PS IKTNIK+A+ +HPYQR
Sbjct: 158 PGKMPSGIKTNIKSAS-MHPYQR 179
>AL139289-6|CAI23382.1| 179|Homo sapiens mediator of RNA polymerase
II transcription, subunit 8 homolog (S. cerevisiae)
protein.
Length = 179
Score = 50.4 bits (115), Expect = 4e-06
Identities = 48/143 (33%), Positives = 61/143 (42%), Gaps = 24/143 (16%)
Frame = +1
Query: 121 AIITSSLSHKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVG 300
A I + + K I K+ S++ E ISK + E +R + T N DT+ALV AV
Sbjct: 40 ARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPN--KQTFNPTDTNALVAAVA 97
Query: 301 TGKGLR---------PGMANMVGQXXXXXXXXXXXXXQLGPAPSTLP------------- 414
GKGL PG A G Q+ APS
Sbjct: 98 FGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQ 157
Query: 415 --KAPSAIKTNIKAANQIHPYQR 477
K PS IKTNIK+A+ +HPYQR
Sbjct: 158 PGKMPSGIKTNIKSAS-MHPYQR 179
>AL139289-5|CAI23381.1| 212|Homo sapiens mediator of RNA polymerase
II transcription, subunit 8 homolog (S. cerevisiae)
protein.
Length = 212
Score = 50.4 bits (115), Expect = 4e-06
Identities = 48/143 (33%), Positives = 61/143 (42%), Gaps = 24/143 (16%)
Frame = +1
Query: 121 AIITSSLSHKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVG 300
A I + + K I K+ S++ E ISK + E +R + T N DT+ALV AV
Sbjct: 40 ARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPN--KQTFNPTDTNALVAAVA 97
Query: 301 TGKGLR---------PGMANMVGQXXXXXXXXXXXXXQLGPAPSTLP------------- 414
GKGL PG A G Q+ APS
Sbjct: 98 FGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQ 157
Query: 415 --KAPSAIKTNIKAANQIHPYQR 477
K PS IKTNIK+A+ +HPYQR
Sbjct: 158 PGKMPSGIKTNIKSAS-MHPYQR 179
>AF521562-1|AAM76709.1| 268|Homo sapiens mediator of RNA polymerase
II transcription subunit MED8 protein.
Length = 268
Score = 50.4 bits (115), Expect = 4e-06
Identities = 48/143 (33%), Positives = 61/143 (42%), Gaps = 24/143 (16%)
Frame = +1
Query: 121 AIITSSLSHKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVG 300
A I + + K I K+ S++ E ISK + E +R + T N DT+ALV AV
Sbjct: 129 ARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPN--KQTFNPTDTNALVAAVA 186
Query: 301 TGKGLR---------PGMANMVGQXXXXXXXXXXXXXQLGPAPSTLP------------- 414
GKGL PG A G Q+ APS
Sbjct: 187 FGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQ 246
Query: 415 --KAPSAIKTNIKAANQIHPYQR 477
K PS IKTNIK+A+ +HPYQR
Sbjct: 247 PGKMPSGIKTNIKSAS-MHPYQR 268
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,818,216
Number of Sequences: 237096
Number of extensions: 1072181
Number of successful extensions: 2461
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2461
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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