Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15m15
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   1.3  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    22   9.3  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    22   9.3  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    22   9.3  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    22   9.3  

>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 5   KQFLFELTNTYNKSKKKNIQFFKSETNVIIIFVMT 109
           KQFL  L    N+ KKK++Q  + + + ++ +  T
Sbjct: 379 KQFLGSLEKQNNEVKKKHLQLLEKQISKLMRYAET 413


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 26  TNTYNKSKKKNIQFFKSETNVIIIFVMTFLHIY 124
           TN  +K   K         NVI+I  MTFL+ Y
Sbjct: 25  TNCPDKYNPKTWPIRLKVRNVIVISSMTFLNQY 57


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 32  TYNKSKKKNIQFFKSETNVIIIFVMTFL 115
           T  KSK+K   FFK+  N+    V+T L
Sbjct: 397 TVPKSKEKISAFFKNNINLFEESVVTVL 424


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 26  TNTYNKSKKKNIQFFKSETNVIIIFVMTFLHIY 124
           TN  +K   K         NVI+I  MTFL+ Y
Sbjct: 25  TNCPDKYNPKTWPIRLKVRNVIVISSMTFLNQY 57


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 26  TNTYNKSKKKNIQFFKSETNVIIIFVMTFLHIY 124
           TN  +K   K         NVI+I  MTFL+ Y
Sbjct: 25  TNCPDKYNPKTWPIRLKVRNVIVISSMTFLNQY 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,734
Number of Sequences: 5004
Number of extensions: 7725
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)