Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15m15
         (180 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.    26   4.1  
AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln (ne...    26   4.1  
U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine rece...    25   5.4  

>AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.
          Length = 417

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 72  LKN*MFFFFDLLYVFV 25
           L N +FFFFD LY FV
Sbjct: 329 LTNMLFFFFDALYWFV 344


>AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln
           (neuronal ceroid lipofuscinosis)related protein 3.3
           protein.
          Length = 417

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 72  LKN*MFFFFDLLYVFV 25
           L N +FFFFD LY FV
Sbjct: 329 LTNMLFFFFDALYWFV 344


>U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein77 protein.
          Length = 313

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +2

Query: 11  FLFELTNTYNKSKKKNIQF-----FKSETNVIIIFVMTFLHI 121
           F F +  ++   KK+   F     F+S  NV IIF++T ++I
Sbjct: 33  FNFLIITSFFTDKKQKTSFNLVCVFRSINNVAIIFILTIVYI 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,290
Number of Sequences: 27780
Number of extensions: 40959
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)