Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15m14
         (363 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769...    29   1.1  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     28   2.0  
02_05_1320 - 35693575-35694846                                         27   3.4  
12_02_0076 + 13284747-13285434,13285507-13285829                       26   7.9  
03_02_0583 + 9635002-9637299                                           26   7.9  

>06_02_0032 +
           10775031-10775520,10775661-10776246,10776333-10776973,
           10777270-10777973
          Length = 806

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 134 IVIMSIGLTCFGLALGYIAYMRQKYESMGYYSAI 235
           ++ ++I L   GL L Y+A  R + ES GY+ A+
Sbjct: 752 VMNITIVLNLLGLLLAYMAGSRMRLESSGYFIAL 785


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 131  NIVIMSIGLTCFGLALGYIAYMRQKYESMGYY 226
            N++ ++I L   GL L Y+A  R + +S GY+
Sbjct: 908  NVMNITIVLDLLGLLLAYMAGSRMRLQSSGYF 939


>02_05_1320 - 35693575-35694846
          Length = 423

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +2

Query: 80  RSTTAFRVVNFELYAKPNIVIMSIGLTCFGLALGYIAYMRQKYESMGYYSAIDKD 244
           R+  AFR +  EL  KP++V  ++ L  F +A G +A  R  ++ M   + ++ D
Sbjct: 164 RAIQAFRTLPAELGIKPSVVSHNVLLKSF-VASGDLASARALFDEMPSKADVEPD 217


>12_02_0076 + 13284747-13285434,13285507-13285829
          Length = 336

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 221 YYSAIDKDGKEIFEKKKSKWD 283
           Y  + +KD K+IF++ K+ WD
Sbjct: 245 YLDSTEKDVKKIFDRFKNDWD 265


>03_02_0583 + 9635002-9637299
          Length = 765

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 144 IMTILGFAYSSKLTTLNAVVDRIDR 70
           IM +LG + + K T ++A+ DRI R
Sbjct: 144 IMAVLGASGAGKTTLIDALADRIQR 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,465,917
Number of Sequences: 37544
Number of extensions: 156262
Number of successful extensions: 359
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)