Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15m13
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    28   1.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   1.9  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    27   1.9  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   3.3  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   4.3  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.7  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   9.9  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    25   9.9  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
 Frame = +1

Query: 100 SSSIATNTLADKCETIKIGNEFYKRQLIATIDGYPTGMAVDPKTDNLFFLLHKRNYTKGI 279
           S+ ++  ++  K + + +  E  K   I  +    T    +   DN+    HK + +   
Sbjct: 371 STELSQGSVISKAKKLNVRPEELKLPEITALSSSNTR---EKYWDNVL-TAHKNDSSART 426

Query: 280 HILKRGSLGVKLLPISDDVIGQCVAIDTVNNIIYIGTNQGILSYDDAHSEIN----SERP 447
              K  +LG  +LP SD    + V +    N   IG+++G++   +  S I      +  
Sbjct: 427 WNWKSKTLGQHVLPTSDGTSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRKSFGQSS 486

Query: 448 IGDDDVRNIFIDNNDNQMYIT 510
           +    V  + +D N N++ +T
Sbjct: 487 LSGKPVTAVMLD-NVNRILVT 506


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 415 DAHSEINSERPIGDDDVRNIFIDNNDNQMYITTGT 519
           D   EIN +  IGD         +NDN + IT GT
Sbjct: 100 DNVQEINPQNTIGDKSAHTEEESSNDNLVKITAGT 134


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/78 (26%), Positives = 34/78 (43%)
 Frame = -2

Query: 665 SIDKKYNLPSTNS*NMLPLLSKTKLYALGTLSYLFTAAVLFMNLNIS*FVPVVIYI*LSL 486
           +I   Y + + +   +L L    K Y L  +  LFT  + F+    S FV  ++Y+ L  
Sbjct: 330 AITGNYFVHAKSEEEVLTLSDIAKNYLLVPMKLLFTEPICFLITLYSSFVYAILYLLLEA 389

Query: 485 LSINMFLTSSSPMGLSEL 432
             I         MG++EL
Sbjct: 390 YPIIFGEKRHFSMGVAEL 407


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -2

Query: 596 KLYALGTLSYLFTAAVLFMNLNIS*FVPVVIYI*LSLLSINMFLTSSSPMGLSEL 432
           K Y L  +  LFT  ++F+    S FV  ++Y+ L    I         MG++EL
Sbjct: 352 KNYLLVPMKLLFTEPIVFLITLYSSFVYAILYLLLEAYPIIFSEKRHFSMGVAEL 406


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 420 GIVVAKYTLICAYINDVV 367
           G V+AKY ++C  IND++
Sbjct: 416 GKVLAKYAMLCVTINDIL 433


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 92   HFYHRPSPRIPSRTNARQSK 151
            HFYHR   +  S TN R+S+
Sbjct: 1199 HFYHRDDGKYKSGTNLRKSE 1218


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 298 SLGVKLLPISDDVIGQCVAIDTVNNIIYIGTNQGIL 405
           S G  L  I+      C+ +D    ++Y+G  +GI+
Sbjct: 207 STGNLLTTIALPSTPSCMTVDPSERVVYVGNEKGII 242


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -2

Query: 521 FVPVVIYI*LSLLSINMFLTSSSPMGLSELISEWASS*LSIP*FVPI*MMLFTVSMA 351
           F P+   I +      + L  S  M  + LI+ W+    SIP F+ I +M FT S+A
Sbjct: 422 FAPIFSSIPVWATGSTLVLVGSMMMKSTTLIN-WSYLGDSIPAFITIALMPFTYSIA 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,417
Number of Sequences: 5004
Number of extensions: 51178
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)