Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15m08
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0179 - 1227573-1227803,1227916-1228138,1228159-1228185,122...    30   1.8  
01_06_0542 + 30096277-30096340,30096444-30096529,30096810-300969...    30   1.8  
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973...    28   5.4  
12_02_0299 - 17051570-17052474,17053542-17053755                       28   7.2  
08_02_0191 + 14041201-14043894,14044354-14044632                       27   9.5  

>02_01_0179 -
           1227573-1227803,1227916-1228138,1228159-1228185,
           1228519-1228651,1228748-1228865,1229357-1229451,
           1229886-1230048
          Length = 329

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 429 FECRSFVGEEVKVGSGCVIGAACTLTAPQILADNTVIWGSEH-HVREALEKQPSQLLQLD 605
           F+C +    E +VG          L   + L   T +W S+H HV EA  K   + L+LD
Sbjct: 51  FDCAADYQNEAEVGDALAEAFQTGLVKREDLFITTKLWNSDHGHVVEAC-KDSLKKLRLD 109

Query: 606 FL 611
           +L
Sbjct: 110 YL 111


>01_06_0542 +
           30096277-30096340,30096444-30096529,30096810-30096934,
           30097405-30097513,30097865-30097981,30098066-30098149,
           30098795-30098914,30099416-30099502,30100160-30100237
          Length = 289

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 438 RSFVGEEVKVGSGCVIGAACTLTAPQILADNTVIWGSEH 554
           ++ +GE   +G   V+G  C     +++ DN +I GS H
Sbjct: 103 QTIIGENNVIGHHAVVGVKCQDLKYKVIGDNNLIMGSCH 141


>11_06_0047 +
           19595904-19596185,19596284-19596424,19597195-19597307,
           19597970-19598049,19598557-19598720,19598931-19599060,
           19599155-19599254,19599452-19599500,19599775-19599849,
           19600026-19600124,19600745-19600823,19600897-19601045,
           19601334-19601393,19601490-19601684
          Length = 571

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 425 ITFTDVTIDRLQFASNFKNIVCTYKQWLWGI--LLFITLFMYY 303
           I    + ++ + FA NF  I      W WG   L F +L M+Y
Sbjct: 291 IVLITLFLNSIIFAPNFSRITAAVGIWSWGAISLAFASLVMFY 333


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 197 ITL*GTVFADSCSG*NFNVVSHFL 126
           +T+ GTVF D+CS  +F+  S+FL
Sbjct: 47  LTVTGTVFCDACSSSSFSNHSYFL 70


>08_02_0191 + 14041201-14043894,14044354-14044632
          Length = 990

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 300 TIIHKKSDKQENPPKPLFI 356
           T++H + D+Q+ PP+PL I
Sbjct: 660 TLLHVRKDRQQPPPRPLQI 678


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,614,286
Number of Sequences: 37544
Number of extensions: 264418
Number of successful extensions: 674
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)