Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15m08
         (639 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D84145-1|BAA19984.1|  190|Homo sapiens WS-3 protein.                  130   4e-30
CR456851-1|CAG33132.1|  190|Homo sapiens DCTN6 protein.               130   4e-30
BC013175-1|AAH13175.1|  190|Homo sapiens dynactin 6 protein.          130   4e-30
BC004191-1|AAH04191.1|  182|Homo sapiens dynactin 5 (p25) protein.     31   4.6  
AK027387-1|BAB55077.1|  182|Homo sapiens protein ( Homo sapiens ...    31   4.6  

>D84145-1|BAA19984.1|  190|Homo sapiens WS-3 protein.
          Length = 190

 Score =  130 bits (314), Expect = 4e-30
 Identities = 67/170 (39%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
 Frame = +3

Query: 141 NIKILPGATVCEDCTLEGDITIGGGTVIHPRVSXXXXXXXXXXXXXXXXXXXSTIIHKKS 320
           ++KI PGA VC +  + GD+TIG  TVIHP+                     + II+   
Sbjct: 8   SVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYP 67

Query: 321 DK----QENP-PKPLFIGAHNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVI 485
           D      E+P PKP+ IG +NVFEV C  +++   +G++NV E +++VG  V + SGC+I
Sbjct: 68  DNITPDTEDPEPKPMIIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVGRNVILTSGCII 125

Query: 486 GAACTLTAPQILADNTVIWGSEHHVREALEKQPSQLLQLDFLSKVMPNYH 635
           GA C L   +++ +NTVI+G++   R   E+   Q LQLDFL K++PNYH
Sbjct: 126 GACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYH 175


>CR456851-1|CAG33132.1|  190|Homo sapiens DCTN6 protein.
          Length = 190

 Score =  130 bits (314), Expect = 4e-30
 Identities = 67/170 (39%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
 Frame = +3

Query: 141 NIKILPGATVCEDCTLEGDITIGGGTVIHPRVSXXXXXXXXXXXXXXXXXXXSTIIHKKS 320
           ++KI PGA VC +  + GD+TIG  TVIHP+                     + II+   
Sbjct: 8   SVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYP 67

Query: 321 DK----QENP-PKPLFIGAHNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVI 485
           D      E+P PKP+ IG +NVFEV C  +++   +G++NV E +++VG  V + SGC+I
Sbjct: 68  DNITPDTEDPEPKPMIIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVGRNVILTSGCII 125

Query: 486 GAACTLTAPQILADNTVIWGSEHHVREALEKQPSQLLQLDFLSKVMPNYH 635
           GA C L   +++ +NTVI+G++   R   E+   Q LQLDFL K++PNYH
Sbjct: 126 GACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYH 175


>BC013175-1|AAH13175.1|  190|Homo sapiens dynactin 6 protein.
          Length = 190

 Score =  130 bits (314), Expect = 4e-30
 Identities = 67/170 (39%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
 Frame = +3

Query: 141 NIKILPGATVCEDCTLEGDITIGGGTVIHPRVSXXXXXXXXXXXXXXXXXXXSTIIHKKS 320
           ++KI PGA VC +  + GD+TIG  TVIHP+                     + II+   
Sbjct: 8   SVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYP 67

Query: 321 DK----QENP-PKPLFIGAHNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVI 485
           D      E+P PKP+ IG +NVFEV C  +++   +G++NV E +++VG  V + SGC+I
Sbjct: 68  DNITPDTEDPEPKPMIIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVGRNVILTSGCII 125

Query: 486 GAACTLTAPQILADNTVIWGSEHHVREALEKQPSQLLQLDFLSKVMPNYH 635
           GA C L   +++ +NTVI+G++   R   E+   Q LQLDFL K++PNYH
Sbjct: 126 GACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYH 175


>BC004191-1|AAH04191.1|  182|Homo sapiens dynactin 5 (p25) protein.
          Length = 182

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 447 VGEEVKVGSGCVIGAACTLTAPQILADNTVI 539
           +G  V VG  CVIG  C L     + DNTV+
Sbjct: 104 IGSYVHVGKNCVIGRRCVLKDCCKILDNTVL 134


>AK027387-1|BAB55077.1|  182|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14481 fis, clone MAMMA1002351, highly similar to
           Mus musculus dynactin subunit p25 (p25) mRNA. ).
          Length = 182

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 447 VGEEVKVGSGCVIGAACTLTAPQILADNTVI 539
           +G  V VG  CVIG  C L     + DNTV+
Sbjct: 104 IGSYVHVGKNCVIGRRCVLKDCCKILDNTVL 134


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,453,412
Number of Sequences: 237096
Number of extensions: 1548027
Number of successful extensions: 2889
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2883
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)