Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15m06
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0189 + 15165485-15168694                                         29   3.9  
06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445           29   3.9  
01_03_0187 + 13578641-13578674,13578822-13578870,13579026-135791...    28   5.2  
12_02_0502 - 19746100-19746185,19746745-19750474                       28   6.9  

>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 211  EKQRKRQSVTEQSRCPSNGSVRRTKHPVQ 297
            E+QR+R+    +SRCPS+   +   H  Q
Sbjct: 1038 ERQRRREKALAKSRCPSHPQAKGAAHKRQ 1066


>06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445
          Length = 352

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 372 LRPEMTTSTARESPPKLFLSVPISTL 295
           LRP+ TT+T R +P    LSVP+  L
Sbjct: 32  LRPDPTTTTHRRAPTAASLSVPVVDL 57


>01_03_0187 +
           13578641-13578674,13578822-13578870,13579026-13579177,
           13579634-13579657,13580589-13580674,13580789-13580867,
           13581362-13581465
          Length = 175

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
 Frame = +3

Query: 210 RKTKEATIS----YRTEPMSK*WKRSSNQTPRTKLRSVPIRKALEVILVPLKSSFLVEGV 377
           RK K++ I     +  E  S  W+  S    RT L+ V   K  E+ +   +S  L  G 
Sbjct: 6   RKDKQSEILIQRVFEAEGCSAHWRNRSESLSRTSLKWV---KFTEIRIFRTESQNLAVG- 61

Query: 378 SMQTLWLMSEMS*NFLVLQNSVDQVGSGT 464
                W+++      L+LQ+SV +  SGT
Sbjct: 62  ----RWVLARCRLGLLILQSSVGRALSGT 86


>12_02_0502 - 19746100-19746185,19746745-19750474
          Length = 1271

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 24/79 (30%), Positives = 39/79 (49%)
 Frame = -1

Query: 530  LVRIVGIRSIP*LH*LDSRECQGPAPDLVHTVL*HQEVLAHLAHQPKRLHRDAFDQK*RL 351
            ++R VG+  +P LH   +  C+  + D   ++L H E  AHL      L     DQ    
Sbjct: 905  IIRHVGLAVLPRLHQAYASTCESLSVDSRLSLL-HIESCAHLTSLDGLL-----DQ---- 954

Query: 350  QRHENHLQSFSYRYRSQLC 294
            Q+H  HL++   R+ ++LC
Sbjct: 955  QQHLQHLKTLLVRHCAKLC 973


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,202,740
Number of Sequences: 37544
Number of extensions: 285906
Number of successful extensions: 760
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)