Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15m05
         (274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    25   1.5  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   1.9  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   1.9  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   2.5  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    24   4.4  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    24   4.4  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    23   5.9  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    23   5.9  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    23   5.9  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   7.8  

>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 50  EKYLIFGNQAHFSPAG 3
           E  LI GN  HFSP G
Sbjct: 145 ENKLILGNDIHFSPTG 160


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 30  PENQIFFTKSTNCSRKTNSDP--DPELMVDRITT 125
           PENQ+ +  + N S   N DP    E +  ++T+
Sbjct: 720 PENQVLYEGNLNSSLSLNEDPSVSDENLTQKVTS 753


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 186 FCFKCVDAPELCSVFNVMNY 245
           F   CV  PE   V N+MNY
Sbjct: 255 FVILCVLCPETLPVINIMNY 274


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 57  STNCSRKTNSDPD-PELMVDRITTITPIRRCLFISQYLK 170
           ST+ +R+  +    P +    ++ ITP +RC F +Q +K
Sbjct: 183 STSSARQNQTGLSYPSVSFSLLSQITPHQRCSFYAQVIK 221


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 16  KCAWFPKIKYFSQKALIAAEK 78
           +C   PKIKY     ++A +K
Sbjct: 269 QCTMIPKIKYLEANLILAIQK 289


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 8   PGKSAPGSRKSNI 46
           P KSAP  RKSNI
Sbjct: 210 PPKSAPSKRKSNI 222


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 139 LIGVIVVILST--INSGSGSELVFRLQLVL 56
           +IG I++ LS   +NSGSG   V+ L L L
Sbjct: 202 VIGWILLALSVTLVNSGSGVRAVYILLLAL 231


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 162 YLK*HFICFCFKCVDAPELCSVFN 233
           Y+K  ++CFC   +      S+FN
Sbjct: 3   YIKCRYVCFCCAFISNTTSKSIFN 26


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 51  TKSTNCSRKTNSDPDPELMVDRITTITPIRRCLFISQYLK 170
           T   + S   NS   P  +  ++T +TP  R L    YL+
Sbjct: 304 TSVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLR 343


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 125 YYTNKAMFVYKPIPKITFYLFLF*VCRCA*IMFCF 229
           ++ ++   VY     I  +LF F +C C  + F F
Sbjct: 137 FFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLF 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,178,101
Number of Sequences: 5004
Number of extensions: 21725
Number of successful extensions: 50
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)