Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15m05
         (274 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0097 + 722064-722429                                             26   4.7  
05_01_0302 - 2376733-2377056                                           26   4.7  
12_02_0532 + 20093147-20093794                                         25   8.3  
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153...    25   8.3  

>11_01_0097 + 722064-722429
          Length = 121

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 98  RIGIRIGFSAAISAFCEKYLI 36
           + G+ +GF  ++S  C KY+I
Sbjct: 99  KCGVNVGFPISLSTDCNKYII 119


>05_01_0302 - 2376733-2377056
          Length = 107

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 245 IIHNIKNRT*FRRIDTLKTETNK 177
           + HN+  +  FR+ID++K + NK
Sbjct: 46  VYHNLAPKPTFRKIDSIKEDINK 68


>12_02_0532 + 20093147-20093794
          Length = 215

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 111 DRITTITPIRRCLFISQYL 167
           D+IT   P  +C FISQ++
Sbjct: 191 DKITQFWPDNKCTFISQFI 209


>08_02_0433 -
           17114880-17114972,17115053-17115149,17115244-17115306,
           17115765-17115918,17115992-17116178,17116567-17116871,
           17117638-17117803,17118261-17118652,17119032-17119208,
           17119565-17119604,17119762-17119809,17122393-17122428,
           17122832-17123104
          Length = 676

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 104 NGRQNHYYYTNKAMFVYKPI 163
           NG+Q+ Y  T    +VY+PI
Sbjct: 160 NGKQHTYIETENVRYVYQPI 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,125,890
Number of Sequences: 37544
Number of extensions: 125410
Number of successful extensions: 247
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)