Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15m05
         (274 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.13 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   3.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   3.7  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    20   4.8  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              20   6.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.13
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 238 ITLKTEHNSGASTHLKQKQIKCYFRYWL 155
           I +   H+  A TH   + +K  F YWL
Sbjct: 313 ILILNYHHRNADTHEMSEWVKVVFLYWL 340


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 225 VFNVMNYY*SNSYEKK 272
           + N+ NY  +N+Y KK
Sbjct: 90  ISNISNYNNNNNYNKK 105


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 225 VFNVMNYY*SNSYEKK 272
           + N+ NY  +N+Y KK
Sbjct: 328 ISNISNYNNNNNYNKK 343


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.2 bits (40), Expect = 4.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 225 VFNVMNYY*SNSYEKK 272
           + N+ NY   N+Y KK
Sbjct: 90  ISNISNYNNDNNYNKK 105


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 187 KQIKCYFRYWLINK 146
           K ++C+F+Y  IN+
Sbjct: 118 KILECFFKYKTINQ 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,334
Number of Sequences: 438
Number of extensions: 1539
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)