Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15m04
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   223   6e-59
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   223   6e-59
AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical ...    32   0.26 
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    30   1.4  
U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical p...    27   7.5  
Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    27   9.9  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    27   9.9  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    27   9.9  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  223 bits (546), Expect = 6e-59
 Identities = 103/181 (56%), Positives = 131/181 (72%)
 Frame = +2

Query: 29  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 208
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 209 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 388
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 389 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKD 568
                 F L+P R +C VGRLSHE+GW+++DVV KLE KRK K       +KK+ ++   
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQ 180

Query: 569 A 571
           A
Sbjct: 181 A 181


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  223 bits (546), Expect = 6e-59
 Identities = 103/181 (56%), Positives = 131/181 (72%)
 Frame = +2

Query: 29  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 208
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 209 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 388
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 389 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKD 568
                 F L+P R +C VGRLSHE+GW+++DVV KLE KRK K       +KK+ ++   
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQ 180

Query: 569 A 571
           A
Sbjct: 181 A 181


>AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical
           protein F15E6.9 protein.
          Length = 664

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 428 NYCHVGRLS--HEIGWKYRDVVRKLEDKRKGKAVK-RVAYEKKLKRITKDAGEKV 583
           +YC  G+ S  H I WKYRD V  ++ K K  A++ R A E K   I  D  +KV
Sbjct: 284 DYC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAKTNVILHDVEQKV 336


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 536 RQLS*QPCPSSCLQAYEQHHGISIQFHGTVCLHDSNY 426
           R+ S   C S  L  +E HHGI +   G + L D++Y
Sbjct: 322 RKRSSAVCSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358


>U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical
           protein C10G8.3 protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 518 PCPSSCLQAYEQHHGISIQFHGTVCLHD 435
           PCP       E+ HGI++Q  G  CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170


>U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical
           protein C50E3.2 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -2

Query: 493 LTNNITVFPSNFMGQSAYMTVITARFQTE 407
           L NNI VFPSN + +++ MT+   R +T+
Sbjct: 27  LENNILVFPSN-ISEASGMTLFHGRIETK 54


>Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical
          protein F25D1.5 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 23 MTGFSNKAIVIDGRGHLLGRLAAVI 97
          M  FS K+++I G  + +GR AAVI
Sbjct: 1  MARFSGKSVIITGSSNGIGRSAAVI 25


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -3

Query: 342 YVRSLLRAF-LPRSVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 166
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 165 LPEMLI 148
           LPE  +
Sbjct: 210 LPEWTV 215


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -3

Query: 342 YVRSLLRAF-LPRSVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 166
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 165 LPEMLI 148
           LPE  +
Sbjct: 210 LPEWTV 215


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -3

Query: 342 YVRSLLRAF-LPRSVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 166
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 165 LPEMLI 148
           LPE  +
Sbjct: 210 LPEWTV 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,543,526
Number of Sequences: 27780
Number of extensions: 283782
Number of successful extensions: 774
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)