Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15l24
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...   149   5e-37
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...   148   6e-37
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    60   2e-10
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    29   0.78 
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    29   0.78 
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    26   5.5  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   5.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.7  
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    25   9.7  

>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score =  149 bits (360), Expect = 5e-37
 Identities = 73/158 (46%), Positives = 102/158 (64%), Gaps = 5/158 (3%)
 Frame = +1

Query: 199 MGQTLSEPVTEKQSATCQDSRFLVGSSCMQGWRVSMDDSHTHILSLPD----DPGTAFFA 366
           MGQTLSEPV +K S++  D     G S MQGWR+SM+D+H  +L+  D    +P T+FF 
Sbjct: 1   MGQTLSEPVLDKHSSSGGDRWLHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFG 60

Query: 367 VYDGHGGSNIAEHAGKHLHKYITARPEYHLGNIEEALKQGFLDLDRAMLEEDMLQEKVAG 546
           V+DGHGG  +A++  +HL   I ++P +  GN +EALK GFL  D A++++  +QE  +G
Sbjct: 61  VFDGHGGDRVAKYCRQHLPDIIKSQPSFWKGNYDEALKSGFLAADNALMQDRDMQEDPSG 120

Query: 547 STAVVVLIKDN-TLYCANVGDSRAVASVRGVVETLSYD 657
            TA   LI D+  +YCAN GDSR V   +G  E LS+D
Sbjct: 121 CTATTALIVDHQVIYCANAGDSRTVLGRKGTAEPLSFD 158


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score =  148 bits (359), Expect = 6e-37
 Identities = 75/157 (47%), Positives = 98/157 (62%), Gaps = 4/157 (2%)
 Frame = +1

Query: 199 MGQTLSEPVTEKQSATCQDSRFLVGSSCMQGWRVSMDDSHTHILSLP----DDPGTAFFA 366
           MGQTLSEPVTEK S    +   L G S MQGWR+SM+D+H+ ILS+      DP   FFA
Sbjct: 1   MGQTLSEPVTEKHSVNGSNEFVLYGLSSMQGWRISMEDAHSAILSMECSAVKDP-VDFFA 59

Query: 367 VYDGHGGSNIAEHAGKHLHKYITARPEYHLGNIEEALKQGFLDLDRAMLEEDMLQEKVAG 546
           VYDGHGG  +A+  G +L + +   P++  G+   ALK  FL+ D+A+L++D      +G
Sbjct: 60  VYDGHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAILDDDQFHTDPSG 119

Query: 547 STAVVVLIKDNTLYCANVGDSRAVASVRGVVETLSYD 657
            TA VVL   N LYCAN GDSR V   +G+ + LS D
Sbjct: 120 CTATVVLRVGNKLYCANAGDSRTVLGSKGIAKPLSAD 156


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
 Frame = +1

Query: 286 QGWRVSMDDSHTHILSLPDDPGTAFFAVYDGHGGSNIAEHAGKHLHKYITARPEYHLGN- 462
           Q WR SM+D+H  +     +    F AVYDGH G   +++  K+LHK +  +        
Sbjct: 80  QRWRRSMEDTHICLYDFGGNQDDGFVAVYDGHAGIQASDYCQKNLHKVLLEKVRNEPDRL 139

Query: 463 IEEALKQGFLDLDRAMLEEDMLQEKVAGSTAVVVLI---KDNT---LYCANVGDSRAVAS 624
           + + + + F++++  + +       + G TA V      K+ T   LY AN GD+R V  
Sbjct: 140 VTDLMDETFVEVNSKIAK--ATHNDICGCTAAVAFFRYEKNRTRRVLYTANAGDARIVLC 197

Query: 625 VRGVVETLSYD 657
             G    LSYD
Sbjct: 198 RDGKAIRLSYD 208


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 307 DDSHTHILSLPDDPGTAFF-AVYDGHGGSNIAEHAGKHL 420
           +D H  ++    D G  +F  ++DGH G N +    +HL
Sbjct: 98  EDDHVEVIDRNIDEGNWYFWGIFDGHSGWNTSLFLRQHL 136


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 358 FFAVYDGHGGSNIAEHAGKHLHKYITARPEYHLGNIEEALKQ 483
           F+ ++DGHGG+  +E    +L K I       L + E+ LK+
Sbjct: 87  FYGLFDGHGGTECSEFLSTNLGKII---ENQDLNDTEKILKE 125


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = -1

Query: 644 VSTTPLTLATALESPTLAQYNVLSLISTTTAVLPAT 537
           V TTP  LAT+L SP L  Y  +   ST  A LP T
Sbjct: 212 VETTPTRLATSLGSPVL--YGRVE--STPPAFLPET 243


>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1021

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 659  WSYDSVSTTPLTLATALES-PTLAQYNVLSLISTTTAVLPAT 537
            ++ DS++  P    T + + PT A YN ++  +    V+P T
Sbjct: 920  FAIDSLTPNPQQQDTVINAVPTFAPYNAMTKFNQKVKVMPGT 961


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 3   SKFICYCMFFFVILKLCNKCFFATKIFFLS 92
           S F C  +FFF +L   +  F  + +FFLS
Sbjct: 111 SLFRCLLLFFFFLLFFLSFSFSFSFLFFLS 140


>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 499 DRAMLEEDMLQEKVAGSTAVVVLIKDNTLYCANVGDSRAVASVR 630
           D A +EE   QEK    T V     +  +  ANV  ++AV +++
Sbjct: 115 DTAKIEESFEQEKAVDETGVDAKDIELVMAQANVSRAKAVTALK 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,211
Number of Sequences: 5004
Number of extensions: 53335
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)