Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15l18
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    30   0.36 
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    28   1.5  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   1.5  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    28   1.5  
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    26   4.5  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    25   7.9  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   7.9  

>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +1

Query: 382 LYQKTDEEELSSGILKTR-KLSDKYKKKVRYFDLLPGDIMFPTPAPIIKHSASDKSILNV 558
           L  ++D   L +G  K+  K+SD  K+      +    I F   +  IK         NV
Sbjct: 200 LSAESDNTILQNGTRKSSVKMSDLGKRIASLPVVKRPPIQFSISSDYIKPVDKSDQTSNV 259

Query: 559 PSPKTSGEVIQAQRASVKPGECKPPLPSKS 648
           PSP +S   ++  R+   P + + P P  S
Sbjct: 260 PSPSSSVGSLRLYRSPSIPNDVEQPQPQSS 289


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 28  QTLDNCKITCVKCKIRLN*HYRNHRNSIK*KAQFARNVLQKPSHGSFQKPQIVKMYQKLL 207
           Q L   K+  V+C+  LN      RN +K  A   +     PS G+F      +++QK +
Sbjct: 27  QLLGGQKVVVVRCE-ELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAV 85

Query: 208 RPSL 219
           R  L
Sbjct: 86  RGML 89


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +1

Query: 226 RKWLVKVQDNHLDRRSLK*KNLNRHIIKKAVFQWFLRCIRDYGILDIVLWSLLYQKTDEE 405
           +K L K    HL    L  +N++RHI  K +     + IR  G +D V   L    T+EE
Sbjct: 448 KKLLEKNPTLHLSLNRLSIRNISRHIDPKILAMLGRQAIR--GFMDDVSKGLRANITEEE 505

Query: 406 E 408
           E
Sbjct: 506 E 506


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 28  QTLDNCKITCVKCKIRLN*HYRNHRNSIK*KAQFARNVLQKPSHGSFQKPQIVKMYQKLL 207
           Q L   K+  V+C+  LN      RN +K  A   +     PS G+F      +++QK +
Sbjct: 27  QLLGGQKVVVVRCE-ELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAV 85

Query: 208 RPSL 219
           R  L
Sbjct: 86  RGML 89


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +1

Query: 379 LLYQKTDEEELSSGILKTR--KLSDKYKKKVRYFDLLPGDIMFPTPAPIIKHSAS--DKS 546
           ++ +  +EEE+   +L TR  KLS K   + RY +++P +       P+ K +    + S
Sbjct: 25  MIIEGLNEEEIE--LLNTRLPKLSKKALARNRYSNIVPYENTRVRLDPMWKEACDYINAS 82

Query: 547 ILNVPSPKT 573
           I+ +PS KT
Sbjct: 83  IVKIPSGKT 91


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 528 FSF*QVYFKCTQS*NEWRSNSSSKSIR*TRRV*TSFTLK 644
           FS+ ++YF C  S +   S+++SK ++  R + T+  L+
Sbjct: 281 FSYAEIYFPCLHSFDAQLSSAASKCVQILRDIITNEELQ 319


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 201 FLIHLYNLWFLKASVTWF 148
           FLI L  +WF  A + WF
Sbjct: 393 FLISLLTVWFFPAGLFWF 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,545
Number of Sequences: 5004
Number of extensions: 60608
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)