Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15l13
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 33 0.035
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 28 1.3
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 1.7
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 1.7
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 27 2.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.0
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 26 4.0
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 26 5.2
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 6.9
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 25 6.9
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 9.1
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 25 9.1
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 33.1 bits (72), Expect = 0.035
Identities = 39/168 (23%), Positives = 69/168 (41%)
Frame = +2
Query: 71 DYFENNLYDDFDNNVQMNSNMFDPILQEVWNNATTGIEKLTKKIDKENTSLKFDAQSIKS 250
DY YD+ D+ MNS + D W K++K I K S + +A + S
Sbjct: 406 DYLSTVTYDNKDSLKNMNSKLVDYF---QWREQ---YRKMSKSIKKPEPSKEREASNTTS 459
Query: 251 AKVLGQVDYKFIAAIVNGKNYNKKEAVESLVLFDQHAVDERIRLEKNLSEYLQKQQWKKV 430
K + + + G N + ++ D + D +RLEK L +L K+ +V
Sbjct: 460 RKGVPPSKRR---RVRGGNNATSRTTSDNTDANDSFSRD--LRLEKILLSHLSKRYEPEV 514
Query: 431 NIDDVHLTLNKDEILYLHNYKDKLSRLGIEWNILGNDQIILSSVPQSI 574
+D ++ +Y+++Y + L + N+ I+ S P I
Sbjct: 515 G-NDAFEVIDDFNSIYIYSYNGERDELVLN-NLRPRYVIMFDSDPNFI 560
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -3
Query: 527 YSILYPTGRAYLCNCE---DKVFRPYLMSNE 444
Y+ YP RA +C CE D + P+L SN+
Sbjct: 313 YTHRYPVHRAIMCRCEYFLDMLAGPFLESNQ 343
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 2 PKGMSQIFENCNSKGVCSYNFEEDYFENNLYDDFDNNVQMNSNMFD 139
PK + FEN N + N+E+ F +++ +F NN+ +M D
Sbjct: 53 PKILDSSFENSNPQD--GPNYEDFDFMGSIHKEFGNNINEMDDMED 96
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 350 DQHAVDERIRLEKNLSEYLQKQQWKKVNIDDVHLTLNKD 466
D + VDE I + + + ++ +VN +DVH +L ++
Sbjct: 485 DGNTVDEAITKQSQTFQLVNSNEFNEVNANDVHKSLRQN 523
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 27.1 bits (57), Expect = 2.3
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = +2
Query: 230 DAQSIKSAKVLGQVDYKFIAAIVNGKNYNKKEAVESLVLFDQHAVDERIRLEKNLSEYLQ 409
DAQS K + + +D+ A V N + V SL L + H + + EK ++
Sbjct: 567 DAQSFKQDEEVTLMDWG--NAYVREINRDASGKVTSLKL-ELHLDGDFKKTEKKVTWLAD 623
Query: 410 KQQWKKVNIDDVHLTLNKDEILYLHNYKDKLS 505
+ V++ D + KD++ NYKD L+
Sbjct: 624 TEDKTPVDLVDFDYLITKDKLEEGENYKDFLT 655
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 567 CGTELSIIWSLPNIFHSIPN 508
C TE+ I+ +L ++FH +PN
Sbjct: 1454 CQTEMKIVRALIDLFHLLPN 1473
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 4.0
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +2
Query: 260 LGQVDYKFIAAIVNGKNYNKKEAVESLVLFDQHAVD--ERIRLEKNLSEYLQKQQWKKVN 433
+G+ YK I+N +NY ++L DQ V + LE+ ++EY +K+Q K
Sbjct: 377 VGRSGYK--KRIINHENYRPLMDDIEILLRDQSFVGHPKLEHLERIVTEYFEKEQTKDTR 434
Query: 434 I-DDVHLTLNKDEIL 475
I V + + +EIL
Sbjct: 435 IMIFVEIRSSAEEIL 449
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 182 EKLTKKIDKENTSLKFDAQSIKSAKVLGQ-VDYKFIAAIVNGKNYNKKEAVESLVLFDQH 358
EK KK +K K ++ K K ++ + + V KNYN+ +E + H
Sbjct: 58 EKKDKKPEKRKKDQKEASEKKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEEDEHNSH 117
Query: 359 AVD 367
VD
Sbjct: 118 GVD 120
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 6.9
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 302 GKNYNKKEAVESLVLFDQHAVDERIRLEKNLSEYLQKQQWKKVNID-DVHLTLNKDEILY 478
GK Y ES VL D +V EK +SE+L ++ WK N D +V + + DE
Sbjct: 58 GKEYGDSGVSESWVL-DFLSVTG----EKTISEFLAQKIWKTSNGDLNVAVDMYFDESFN 112
Query: 479 LHNYK-DKLSRLGIEWNILGNDQI 547
+ N D S+ + ++ DQ+
Sbjct: 113 IKNSNPDSESQKDTDASLTQMDQL 136
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 25.4 bits (53), Expect = 6.9
Identities = 20/105 (19%), Positives = 45/105 (42%)
Frame = +2
Query: 92 YDDFDNNVQMNSNMFDPILQEVWNNATTGIEKLTKKIDKENTSLKFDAQSIKSAKVLGQV 271
YD + + +++FD LQE + +++ + N + K +S++ + Q
Sbjct: 13 YDSLKSKISNFNSIFDRFLQEERKKLLNNKNEYLRQLSEINEAQKKAEKSLEQTEARKQ- 71
Query: 272 DYKFIAAIVNGKNYNKKEAVESLVLFDQHAVDERIRLEKNLSEYL 406
F + K + ++ E + Q +D ++ ++ LSE L
Sbjct: 72 --NFTELL--EKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEEL 112
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 9.1
Identities = 29/141 (20%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Frame = +2
Query: 104 DNNVQMNSNMFDPILQEVWNNATTGIEKLTKKIDKENTSLKFD----AQSIKSAKVLGQV 271
+N V NS ++ +L NN++ K +++ +EN L + I+ + L Q+
Sbjct: 378 ENFVHWNSTVYQELLNLKSNNSSVDGVKTRRQLLEENALLSHKVLKLTEEIQDLETLNQL 437
Query: 272 DYKFIAAIVNGKNYNKKEA--VESLVLFDQHAVDERIRLEKNLSEYLQKQQWKKVNIDDV 445
+ + A N ++E + L++ Q A+ E L+ LS+ ++ ++
Sbjct: 438 NTEIEARQSEKLNEVQEETQRLSQLLISSQPALTEVKHLKLCLSDSQEELLQLNAKLEKA 497
Query: 446 HLTLNKDEILYLHNYKDKLSR 508
++ +++ L++ K KLS+
Sbjct: 498 NIVIDE-----LNSAKLKLSK 513
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 9.1
Identities = 22/93 (23%), Positives = 43/93 (46%)
Frame = +2
Query: 107 NNVQMNSNMFDPILQEVWNNATTGIEKLTKKIDKENTSLKFDAQSIKSAKVLGQVDYKFI 286
+ VQ + D +L+ ++N + ++ + +++ +L +V+GQ + FI
Sbjct: 565 SGVQKDIVRSDALLK--FSNKIGVVHDISDENQEDHLNLTVHKADFLRMRVVGQFNRGFI 622
Query: 287 AAIVNGKNYNKKEAVESLVLFDQHAVDERIRLE 385
+V+G N L + DQHA DE+ E
Sbjct: 623 V-VVHGNN---------LFIIDQHASDEKFNYE 645
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,410
Number of Sequences: 5004
Number of extensions: 52071
Number of successful extensions: 186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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