Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15l05
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    28   0.80 
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    27   1.9  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    27   2.5  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    26   4.3  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   5.7  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   7.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   7.5  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   9.9  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 274 DGAIKQLKYDVAGMENHRTKQHG 342
           DG  ++LKY   G+ENH + Q G
Sbjct: 679 DGLPQRLKYSAVGLENHLSIQQG 701


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 305 LRVWKITERNNMVIQH*SILDDLPVSLSMKVTTPSTL 415
           +++WK+ E+N  V+   ++ D     +   +TTPS L
Sbjct: 115 IKLWKLYEKNLKVVAENNLSDSFHSPMQGPLTTPSQL 151


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 4   FFFFHSRLSTLHLNIVFSKAHY 69
           + FFHS++STLHL +     H+
Sbjct: 77  YSFFHSQVSTLHLRVRKELDHF 98


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 466 WEMIINEKQLEGFMANPVNIMESLQEEN 549
           ++ + +E    GF+++P+N  E L EEN
Sbjct: 88  YQRLYDESNSLGFISSPLNETEHLSEEN 115


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 2   FFFFFILVYPHFI*ILYFLRLITISLLSHSL 94
           FFF+FIL + HFI I  ++  I I   S  L
Sbjct: 356 FFFYFILDHLHFISIGNYMPSILILAASFML 386


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 493 VAFRL*SSPKSLDTSWLSPHYLQVLGQ--SRWC 401
           + + L  SPK + TSW SP     +G   +R+C
Sbjct: 364 IRYGLRMSPKEITTSWGSPKSYSEIGDLFARYC 396


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 197 LRFH*LFFAARVLECHSPKLLPLI 268
           L FH   F AR+L C  PK  PL+
Sbjct: 136 LPFHDHPFFARILGCSKPKSRPLL 159


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 316 ENHRTKQHGHPALIDPGRSSGEPLNEGHYTIDFAPAPGDNEETAMRC 456
           +  R ++  HP  ++ GR+S E      +  D+   P DN++    C
Sbjct: 509 QKDRERKQVHP--VEMGRNSSEKKPRCDFGWDYEAFPNDNQDADDAC 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,016
Number of Sequences: 5004
Number of extensions: 47161
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)