Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15l03
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.18 |||mitochondrial electron carrier |Schizosaccharomyc...    26   4.4  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    26   5.9  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   5.9  

>SPAC25B8.18 |||mitochondrial electron carrier |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 121

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +1

Query: 94  CLVRWAKQKGKPYIVEELQHTDFFKL 171
           CLV W K K  PY +  LQ  DF KL
Sbjct: 96  CLVDWDKGKVSPYSI-LLQTRDFSKL 120


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
 Frame = +1

Query: 7   HNQNEGDSVHALIEKCTKNK-----LAYTPFE 87
           +N++ GD++H  I+   +NK     + +TPFE
Sbjct: 63  NNKSSGDALHEAIQSLKRNKVGLKGILFTPFE 94


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 505 KTVVNSIW-YALDKIIMSAGYDLRFAHAHQIIFFRLRYHRQPIGIQYINIYYTLSPGRR 332
           K VV S++ + +  ++M   Y   F     +  F    HR    + ++N+YY  S G +
Sbjct: 633 KIVVGSLFMFTICNLLMYYLYGSPFLEHTYLYHFGRTDHRHNFSLHHLNLYYESSFGAK 691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,032
Number of Sequences: 5004
Number of extensions: 52550
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)