Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15l03
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0446 + 3462820-3464265                                           29   3.5  
03_02_0973 - 12826036-12826131,12826379-12826462,12826542-128265...    29   4.6  
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580...    28   8.0  

>11_01_0446 + 3462820-3464265
          Length = 481

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 390 GSLLAYSTSIFITHCLLADAFIHKVW 313
           G L   S  +F+THC++A   I ++W
Sbjct: 373 GRLARISHGVFVTHCIIAILVIRELW 398


>03_02_0973 -
           12826036-12826131,12826379-12826462,12826542-12826595,
           12826742-12826830,12826889-12826985,12827066-12827074,
           12827419-12827478,12828082-12828204,12828654-12828758,
           12830203-12830535
          Length = 349

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 314 HTLCIKASARRQCVINIDVLYANRLPMIPQAKKDDLMSMCKSQIIPS 454
           HTLCI A+A   C++        R  M P AK   + +M +   IPS
Sbjct: 212 HTLCIGAAAGHACLVLAAGKKGKRY-MFPHAKDSIMPAMIQQPRIPS 257


>07_03_1615 - 28157237-28157472,28157649-28157728,28157853-28158009,
            28158379-28158565,28158646-28158772,28159218-28159805,
            28159898-28160443,28161579-28161620,28162081-28162145,
            28162273-28162377,28162682-28162741,28163149-28163237,
            28163611-28163732,28163862-28163968,28164041-28164111,
            28164377-28164470,28165010-28165247,28166112-28166347
          Length = 1049

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 327  IHKVW*SSAAKSYLYNIVIYKDLQVLNTSLI 235
            I  V+ ++AA   L++I  YKD +VLN  L+
Sbjct: 925  IRSVFLAAAAAQILHSIFTYKDYEVLNHQLL 955


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,410,783
Number of Sequences: 37544
Number of extensions: 286339
Number of successful extensions: 566
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)